Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LOY68_RS23500 Genome accession   NZ_CP087205
Coordinates   5277324..5277962 (-) Length   212 a.a.
NCBI ID   WP_054051742.1    Uniprot ID   A0A6L5BRY9
Organism   Pseudomonas sp. B21-053     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5272324..5282962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY68_RS23465 (LOY68_23445) - 5272720..5273190 (-) 471 WP_054051753.1 (2Fe-2S)-binding protein -
  LOY68_RS23470 (LOY68_23450) murB 5273437..5274456 (-) 1020 WP_265040302.1 UDP-N-acetylmuramate dehydrogenase -
  LOY68_RS23475 (LOY68_23455) - 5274453..5274917 (-) 465 WP_054613853.1 low molecular weight protein-tyrosine-phosphatase -
  LOY68_RS23480 (LOY68_23460) kdsB 5274917..5275681 (-) 765 WP_054051747.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LOY68_RS23485 (LOY68_23465) - 5275678..5275863 (-) 186 WP_007945752.1 Trm112 family protein -
  LOY68_RS23490 (LOY68_23470) lpxK 5275889..5276899 (-) 1011 WP_265040307.1 tetraacyldisaccharide 4'-kinase -
  LOY68_RS23495 (LOY68_23475) - 5276899..5277327 (-) 429 WP_265040308.1 ExbD/TolR family protein -
  LOY68_RS23500 (LOY68_23480) exbB 5277324..5277962 (-) 639 WP_054051742.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LOY68_RS23505 (LOY68_23485) comA 5278049..5280283 (-) 2235 WP_265040309.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LOY68_RS23510 (LOY68_23490) - 5280420..5280935 (+) 516 WP_163913001.1 DUF2062 domain-containing protein -
  LOY68_RS23515 (LOY68_23495) - 5281047..5281826 (-) 780 WP_054051736.1 ABC transporter permease -
  LOY68_RS23520 (LOY68_23500) - 5281823..5282755 (-) 933 WP_054051734.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 23143.36 Da        Isoelectric Point: 7.3616

>NTDB_id=628122 LOY68_RS23500 WP_054051742.1 5277324..5277962(-) (exbB) [Pseudomonas sp. B21-053]
MWELVKSGGWMMLPIILSSIVAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGTGMTTNAAVLAGGISKALITTA
SGLIVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLSEGKKA

Nucleotide


Download         Length: 639 bp        

>NTDB_id=628122 LOY68_RS23500 WP_054051742.1 5277324..5277962(-) (exbB) [Pseudomonas sp. B21-053]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGCTGCCGATCATTTTGAGTTCCATCGTGGCCATGGCGATCGTCGC
CGAGCGTCTGTGGACCCTGCGTGCCAGCCGAGTGACCCCGGAGCATTTGCTAGGGCAAGTCTGGGTCTGGATCAAAGACA
AACAGCTCAATAAAGAAAAACTCAAGGAACTGCGCGCCAACTCGCCGTTGGGCGAAATCCTCGCGGCAGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGTATCGAAGAGGCCGCCGCCCGGGTCATCCACGAACTGGAGCGTTACAT
CAACGCCTTGGGCACCATCGCCGCCATGGCCCCGTTGCTCGGGCTGCTGGGGACGGTGCTGGGCATGATCGATATCTTCA
GCTCGTTCATGGGCACCGGCATGACCACCAATGCGGCGGTGCTGGCCGGCGGTATTTCCAAAGCCTTGATCACTACGGCT
TCGGGGCTGATCGTCGGTATCCCGTCGGTATTCTTCCATCGGTTCCTGCAACGGCGCATCGATGAGCTGGTGGTGGGGAT
GGAGCAGGAAGCCATCAAGCTGGTTGAAGTGGTGCAGGGCGACCGTGACGTGGACCTGTCCGAGGGCAAAAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6L5BRY9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

83.333

99.057

0.825