Detailed information NTG0628101

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: LOY70_RS25420
• Genome accession: NZ_CP087204
• Coordinates: 5856217..5857563 (+)
• Length: 448 a.a.
• NCBI ID: WP_265030361.1
• Uniprot ID: -
• Organism: Pseudomonas sp. B21-054
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5851217..5862563

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LOY70_RS25395 (LOY70_25350)	pgeF	5851385..5852110 (-)	726	WP_265030354.1	peptidoglycan editing factor PgeF	-
LOY70_RS25400 (LOY70_25355)	rluD	5852107..5853069 (-)	963	WP_192263756.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
LOY70_RS25405 (LOY70_25360)	-	5853221..5854237 (+)	1017	WP_123344867.1	outer membrane protein assembly factor BamD	-
LOY70_RS25410 (LOY70_25365)	-	5854408..5854641 (+)	234	WP_123344866.1	PP0621 family protein	-
LOY70_RS25415 (LOY70_25370)	pilS	5854631..5856220 (+)	1590	WP_265030359.1	sensor histidine kinase	Regulator
LOY70_RS25420 (LOY70_25375)	pilR	5856217..5857563 (+)	1347	WP_265030361.1	sigma-54-dependent transcriptional regulator	Regulator
LOY70_RS25425 (LOY70_25380)	-	5857772..5858137 (-)	366	WP_265030363.1	DUF6124 family protein	-
LOY70_RS25430 (LOY70_25385)	thiO	5859304..5860404 (-)	1101	WP_265030364.1	glycine oxidase ThiO	-
LOY70_RS25435 (LOY70_25390)	-	5860461..5860865 (-)	405	WP_265030366.1	type IV pilin protein	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 50267.69 Da
• Isoelectric Point: 5.9443

>NTDB_id=628101 LOY70_RS25420 WP_265030361.1 5856217..5857563(+) (pilR) [Pseudomonas sp. B21-054]
MNIRSRQRILIVDDEPDIRELLDITLGRMKLDTRSAKNLAEAQSLLMDETFDLCLTDMRLPDGTGLELVQHIQQRYPQLP
VAMITAYGSLETAIDALKAGAFDFLTKPVDLGRLRELVTSALRLPSVTTPAATIERCLLGDSPPMRSVRKQIEKLARSQA
PVYISGESGCGKELVARLIHEQGPRTNQRFVPVNCGAIPSELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRAVGGQQEEVVDVRILCATHKDLDGEVAAGRFRQDLYYRLNVIELRVPPLRERREDIGLLA
EHMLQRLAANAGSPTVKLHPQALDALRNYRFPGNVRELENMLERAYTLCEHQQIEADDLRLAEGNGSSEAGNPDLMQVDN
LEDYLEDVERKLILQALEETRWNRTAAAQRLKLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1347 bp

>NTDB_id=628101 LOY70_RS25420 WP_265030361.1 5856217..5857563(+) (pilR) [Pseudomonas sp. B21-054]
TTGAATATTCGCTCACGGCAACGAATCCTGATCGTCGACGACGAACCGGACATCCGCGAACTCCTGGACATCACCCTGGG
AAGGATGAAACTCGACACCCGCAGCGCCAAGAACCTCGCCGAGGCCCAAAGCCTGCTGATGGACGAAACCTTCGACCTGT
GCCTGACCGACATGCGCCTGCCCGATGGTACCGGCCTGGAACTGGTACAGCACATCCAGCAGCGTTACCCCCAACTCCCC
GTGGCGATGATCACCGCCTACGGCAGCCTGGAAACCGCCATCGACGCGCTCAAGGCCGGGGCCTTCGACTTCCTGACCAA
ACCGGTCGACCTGGGCCGCCTGCGGGAACTGGTCACCAGCGCCTTGCGCCTGCCATCCGTCACCACACCTGCCGCCACCA
TCGAGCGCTGCCTGCTGGGCGACTCCCCTCCGATGCGCAGCGTGCGCAAACAGATCGAAAAACTCGCCCGCAGCCAGGCA
CCGGTATACATCAGCGGGGAGTCAGGCTGCGGTAAGGAACTGGTTGCCCGGTTGATCCACGAACAAGGTCCCCGCACCAA
CCAGCGTTTTGTACCGGTCAACTGTGGGGCCATTCCCAGCGAGTTGATGGAAAGCGAGTTTTTCGGTCATCGAAAAGGCA
GCTTCAGCGGCGCCATCGAAGACAAACCTGGGTTGTTCCAGGCCGCCCATGGAGGGACCTTGTTCCTCGATGAAGTGGCC
GACCTGCCCCTGGCCATGCAGGTCAAACTGCTGCGGGCGATCCAGGAAAAAGCCGTGCGTGCCGTCGGCGGCCAGCAGGA
AGAAGTGGTGGATGTGCGAATCCTCTGCGCGACCCACAAGGACCTGGACGGCGAAGTGGCCGCCGGGCGCTTTCGCCAGG
ACCTTTACTATCGGCTGAACGTCATCGAACTGCGCGTGCCGCCATTGCGTGAACGCCGCGAAGACATTGGGCTGCTGGCC
GAGCACATGCTCCAGCGCCTGGCGGCCAACGCCGGCAGCCCTACGGTCAAGCTTCATCCCCAAGCGCTGGACGCCCTGCG
CAACTACCGTTTCCCGGGCAATGTGCGGGAACTGGAGAATATGCTCGAACGGGCCTACACCCTTTGCGAACATCAACAGA
TCGAAGCCGACGACCTGCGCCTGGCCGAGGGTAATGGCAGCTCTGAGGCGGGCAACCCCGATTTGATGCAGGTTGATAAC
CTGGAAGACTACCTGGAAGACGTCGAGCGCAAACTCATCCTCCAGGCCCTGGAGGAAACCCGCTGGAACCGCACGGCGGC
GGCGCAGCGGTTGAAGTTGTCGTTTCGGTCGATGCGGTATCGGTTGAAGAAGTTGGGGTTGGATTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (9-118)

• Bacterial regulatory protein, Fis family (HTH_8) (405-445)

• Sigma-54 interaction domain (Sigma54_activat) (139-304)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	79.279	99.107	0.786
pilR	Acinetobacter baumannii strain A118	49.455	100	0.507