Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   LOY70_RS25415 Genome accession   NZ_CP087204
Coordinates   5854631..5856220 (+) Length   529 a.a.
NCBI ID   WP_265030359.1    Uniprot ID   -
Organism   Pseudomonas sp. B21-054     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5849631..5861220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY70_RS25395 (LOY70_25350) pgeF 5851385..5852110 (-) 726 WP_265030354.1 peptidoglycan editing factor PgeF -
  LOY70_RS25400 (LOY70_25355) rluD 5852107..5853069 (-) 963 WP_192263756.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LOY70_RS25405 (LOY70_25360) - 5853221..5854237 (+) 1017 WP_123344867.1 outer membrane protein assembly factor BamD -
  LOY70_RS25410 (LOY70_25365) - 5854408..5854641 (+) 234 WP_123344866.1 PP0621 family protein -
  LOY70_RS25415 (LOY70_25370) pilS 5854631..5856220 (+) 1590 WP_265030359.1 sensor histidine kinase Regulator
  LOY70_RS25420 (LOY70_25375) pilR 5856217..5857563 (+) 1347 WP_265030361.1 sigma-54-dependent transcriptional regulator Regulator
  LOY70_RS25425 (LOY70_25380) - 5857772..5858137 (-) 366 WP_265030363.1 DUF6124 family protein -
  LOY70_RS25430 (LOY70_25385) thiO 5859304..5860404 (-) 1101 WP_265030364.1 glycine oxidase ThiO -
  LOY70_RS25435 (LOY70_25390) - 5860461..5860865 (-) 405 WP_265030366.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58803.45 Da        Isoelectric Point: 6.8269

>NTDB_id=628100 LOY70_RS25415 WP_265030359.1 5854631..5856220(+) (pilS) [Pseudomonas sp. B21-054]
MSAEASSPRVKQAQRLLRLYHLYRLSIGITLVLLISSNMDNRLLEFANDDLLRSGIWLYLVLNILLVVFLENTRRPARLF
GLALTDVLLLSWLFFAAGGAPSAIGNLLIVSVAIGNTLLRGRIGLLIAAVATIGIVSSTFFLGLSDSNRPSSYLQAGTLG
ALCFAAALLVQGLTRRLEASETLAEQRASEVIGLEALNALILQRMRTGILVLDRERRVQLANESALNLLGMHDLVGQPID
DYSTALVERLQLWLNNPSLRPPSLTVSSTGLSLQPSFIALGHNDQHQTLVFLEDLAQVAQHAQQLKLASLGRLTAGIAHE
IRNPLGAISHAAQLLRESEELNDADRRLTQIIQDHSQRMNRVIENVLQLSRRQQTTPQRLDLRAWLEQFVRQSRENATEP
QQLHLSIDPGDYTTLMDPDQLTQVLDNLLRNAWRHSAMLHEQAEAWLKLFIDPDSQLSTLDIFDNGPGVPAEQQAHLFEP
FFTTSNQGTGLGLYLSRELCESNQARLDFKPRQGGGCFRITFAHGRKQI

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=628100 LOY70_RS25415 WP_265030359.1 5854631..5856220(+) (pilS) [Pseudomonas sp. B21-054]
GTGAGCGCTGAGGCCTCAAGCCCGCGCGTCAAACAGGCGCAGCGCTTGCTGCGTCTCTACCACCTGTACCGCCTGAGCAT
CGGCATCACCCTGGTGTTGCTGATCTCCAGCAACATGGACAATCGCCTGCTGGAGTTCGCCAACGACGACCTGCTGCGCA
GCGGCATCTGGTTGTACCTGGTGCTGAACATCCTGCTGGTGGTGTTCCTGGAAAACACCCGCCGCCCTGCCCGGCTGTTC
GGTCTCGCCCTTACCGACGTGCTGTTGCTTTCGTGGCTGTTCTTCGCCGCTGGCGGCGCCCCCAGTGCTATCGGCAACCT
GCTCATCGTCTCGGTCGCCATCGGCAACACGCTGTTGCGCGGTCGAATCGGCCTGTTGATCGCCGCCGTCGCTACGATTG
GTATCGTCAGCTCGACGTTCTTCCTCGGCCTGAGCGATTCAAACCGTCCCAGCAGTTACTTGCAGGCCGGCACCCTGGGG
GCGCTGTGTTTCGCCGCCGCCCTGCTGGTACAAGGCCTGACCCGGCGACTGGAAGCCAGCGAAACCCTGGCCGAGCAACG
CGCCAGCGAAGTGATCGGCCTCGAAGCGCTCAATGCCCTCATCCTGCAACGCATGCGCACCGGCATCCTGGTGCTTGATC
GCGAGCGCCGGGTACAACTGGCCAACGAAAGCGCGCTGAACCTGTTGGGCATGCACGATCTGGTCGGCCAGCCCATCGAC
GATTACTCCACGGCCCTGGTCGAGCGCCTGCAATTGTGGCTGAACAACCCCAGCCTGCGCCCGCCAAGCCTGACCGTTTC
CAGCACGGGATTGAGCCTGCAACCGAGCTTCATCGCCCTGGGGCACAATGACCAGCATCAGACCCTGGTATTCCTCGAAG
ACCTGGCCCAGGTCGCCCAGCACGCCCAGCAACTCAAACTTGCCTCTCTCGGGCGCCTGACCGCCGGTATCGCCCATGAA
ATCCGCAACCCCTTGGGGGCGATCAGTCATGCGGCGCAATTGCTGCGCGAATCCGAGGAACTGAACGACGCGGATCGACG
TCTGACGCAGATTATTCAAGACCACTCTCAACGAATGAATCGCGTCATTGAAAACGTCCTGCAACTGTCCCGCCGCCAGC
AAACCACGCCCCAACGCCTGGATCTGCGGGCTTGGCTTGAGCAGTTCGTCCGCCAGTCCCGCGAAAACGCAACCGAGCCC
CAGCAATTGCACCTGAGCATCGACCCGGGCGACTACACCACGCTGATGGATCCCGACCAGTTGACCCAAGTGCTCGACAA
CCTGTTGCGCAACGCCTGGCGCCACAGCGCCATGCTCCATGAACAGGCCGAGGCCTGGCTGAAACTGTTCATCGACCCCG
ACAGTCAGTTATCCACACTGGATATCTTCGACAACGGCCCCGGCGTCCCAGCGGAGCAGCAAGCGCATCTGTTCGAGCCC
TTCTTCACCACCAGCAACCAGGGCACTGGCCTTGGGCTCTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCCCGCCT
AGACTTCAAACCACGCCAAGGCGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAGATTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

59.28

99.811

0.592