Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   LOY63_RS04200 Genome accession   NZ_CP087202
Coordinates   939196..940539 (-) Length   447 a.a.
NCBI ID   WP_010451839.1    Uniprot ID   -
Organism   Pseudomonas asplenii strain B21-058     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 934196..945539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY63_RS04185 (LOY63_04185) - 934452..937583 (+) 3132 WP_265085273.1 pilus assembly protein -
  LOY63_RS04190 (LOY63_04190) - 937596..937994 (+) 399 WP_010451835.1 type IV pilin protein -
  LOY63_RS04195 (LOY63_04195) thiO 938046..939149 (+) 1104 WP_010451837.1 glycine oxidase ThiO -
  LOY63_RS04200 (LOY63_04200) pilR 939196..940539 (-) 1344 WP_010451839.1 sigma-54 dependent transcriptional regulator Regulator
  LOY63_RS04205 (LOY63_04205) pilS 940542..942131 (-) 1590 WP_010451841.1 PAS domain-containing sensor histidine kinase Regulator
  LOY63_RS04210 (LOY63_04210) - 942121..942354 (-) 234 WP_010451843.1 PP0621 family protein -
  LOY63_RS04215 (LOY63_04215) - 942494..943510 (-) 1017 WP_010451846.1 outer membrane protein assembly factor BamD -
  LOY63_RS04220 (LOY63_04220) rluD 943661..944623 (+) 963 WP_019361539.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LOY63_RS04225 (LOY63_04225) pgeF 944620..945345 (+) 726 WP_019361538.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 447 a.a.        Molecular weight: 49905.21 Da        Isoelectric Point: 6.2844

>NTDB_id=628026 LOY63_RS04200 WP_010451839.1 939196..940539(-) (pilR) [Pseudomonas asplenii strain B21-058]
MSPRQKILIVDDEPDIRELLEITLGRMKLETQSARNVGEAREKLARDSFDLCLTDMRLPDGTGLELVQHIQQRHPQVPVA
MITAYGSLDTAINALKSGAFDFLTKPVDLPRLRELVTSALRLPMAGQKPTTIDTRLLGDSLPMRALRKQIDKLARSQAPV
YISGESGSGKELVARLIHEQGPRAERPFVPVNCGAIPSELMESEFFGHRKGSFSGAVEDKPGLFQAANGGTLFLDEVADL
PLAMQVKLLRAIQEKAVRSIGGQQEEVVDVRILCATHKDLNAEVSAERFRQDLYYRLNVIELRVPPLRERRDDIEPLAGN
VLKRLASGSGLPAARLHPQALDTLKNYRFPGNVRELENMLERAYTLCENDQIEACDLRLAEASGNTAEAGEPSLAQIDNL
EDYLESVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1344 bp        

>NTDB_id=628026 LOY63_RS04200 WP_010451839.1 939196..940539(-) (pilR) [Pseudomonas asplenii strain B21-058]
ATGAGCCCACGGCAAAAGATCCTGATCGTCGATGATGAGCCGGATATCCGCGAACTCCTGGAAATCACCCTGGGCCGGAT
GAAACTCGAGACCCAGAGCGCCCGCAATGTCGGCGAAGCACGAGAGAAACTGGCCCGCGACAGCTTCGACCTGTGCCTGA
CGGATATGCGCCTGCCGGATGGCACCGGCCTGGAACTGGTGCAACACATCCAGCAGCGTCATCCCCAGGTGCCGGTGGCA
ATGATCACTGCCTACGGCAGCCTCGATACCGCCATCAATGCGCTCAAGTCCGGCGCCTTCGACTTTCTCACCAAACCGGT
GGACTTGCCCCGCCTGCGCGAACTGGTCACCAGCGCCTTGCGGCTGCCCATGGCCGGGCAGAAACCGACCACCATCGATA
CTCGGTTGCTCGGCGACTCGCTACCGATGCGAGCCTTGCGCAAACAGATCGATAAGCTGGCTCGCAGCCAGGCACCGGTC
TATATCAGTGGCGAATCGGGCAGTGGCAAGGAACTGGTGGCCCGCCTGATCCACGAGCAGGGTCCCCGCGCCGAACGGCC
GTTCGTGCCGGTCAACTGCGGAGCGATTCCGTCGGAACTGATGGAAAGCGAATTTTTCGGCCACCGCAAAGGCAGCTTCA
GCGGTGCCGTCGAGGACAAGCCCGGACTGTTCCAGGCGGCCAACGGTGGCACGCTGTTCCTCGACGAAGTGGCCGACCTG
CCACTGGCAATGCAGGTCAAACTGCTGCGGGCGATCCAGGAAAAGGCCGTACGCAGCATTGGCGGGCAGCAGGAAGAAGT
GGTGGATGTGCGCATCCTCTGTGCCACCCACAAGGACCTGAACGCCGAAGTCAGCGCCGAACGGTTTCGCCAGGATCTCT
ATTACCGGCTGAATGTCATCGAGCTGCGCGTCCCGCCCTTGCGCGAGCGCCGCGACGATATCGAGCCACTGGCGGGCAAT
GTGCTCAAACGCCTGGCCTCGGGCAGTGGATTGCCTGCCGCCAGGCTGCACCCACAGGCACTGGATACGCTCAAGAACTA
TCGTTTTCCCGGCAATGTGCGAGAGCTGGAGAACATGCTTGAGCGGGCCTATACCTTGTGCGAAAACGACCAGATCGAAG
CCTGCGACCTGCGCTTGGCCGAAGCCTCGGGCAATACAGCCGAGGCCGGTGAGCCGAGCCTGGCGCAGATCGACAACCTT
GAGGACTACCTGGAGAGCGTCGAACGCAAGCTGATCCTCCAGGCTCTGGAGGAAACCCGCTGGAACCGCACGGCAGCGGC
GCAGCGGTTGAGCCTGTCGTTTCGCTCGATGCGTTATCGCCTGAAGAAACTGGGGCTGGACTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(404-444)

Sigma-54 interaction domain (Sigma54_activat)

(137-302)

Response regulator receiver domain (Response_reg)

(7-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

82.287

99.776

0.821
  pilR Acinetobacter baumannii strain A118

47.712

100

0.49