Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   LOY63_RS04205 Genome accession   NZ_CP087202
Coordinates   940542..942131 (-) Length   529 a.a.
NCBI ID   WP_010451841.1    Uniprot ID   -
Organism   Pseudomonas asplenii strain B21-058     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 935542..947131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY63_RS04190 (LOY63_04190) - 937596..937994 (+) 399 WP_010451835.1 type IV pilin protein -
  LOY63_RS04195 (LOY63_04195) thiO 938046..939149 (+) 1104 WP_010451837.1 glycine oxidase ThiO -
  LOY63_RS04200 (LOY63_04200) pilR 939196..940539 (-) 1344 WP_010451839.1 sigma-54 dependent transcriptional regulator Regulator
  LOY63_RS04205 (LOY63_04205) pilS 940542..942131 (-) 1590 WP_010451841.1 PAS domain-containing sensor histidine kinase Regulator
  LOY63_RS04210 (LOY63_04210) - 942121..942354 (-) 234 WP_010451843.1 PP0621 family protein -
  LOY63_RS04215 (LOY63_04215) - 942494..943510 (-) 1017 WP_010451846.1 outer membrane protein assembly factor BamD -
  LOY63_RS04220 (LOY63_04220) rluD 943661..944623 (+) 963 WP_019361539.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LOY63_RS04225 (LOY63_04225) pgeF 944620..945345 (+) 726 WP_019361538.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 59043.03 Da        Isoelectric Point: 7.1069

>NTDB_id=628027 LOY63_RS04205 WP_010451841.1 940542..942131(-) (pilS) [Pseudomonas asplenii strain B21-058]
MTAETFSLGGAQAQRLLRLYNLYRLSIGITLVLLISSKMDDKLLELTDGELFRTGSWIYLILNILVVVLLENPKRQAQVF
GLALADAVMLSGLFYAAGGTPSGLGNLLIASVAISNVLLRGRMGLLIAAISAIGIIYLTFYLSFSRPAAANYYVQAGLLG
VLCFAASFLVQGLTRLLDVSETLAEQRASDVTKLEELNALILQRMHTGILVLDAEYRVQLANQSVLTLLGQEHLHGRLIE
TYSPQLIAGLQLWQSNPTLRPKSLKVVGSSTVLQPSFIALQRGEQQETLIFLEDQSKITQQAQQLKLVALGRLTAGIAHE
IRNPLGAISHAAQLLQESEELHGPDRRLTQIIQDQSKRMNLVIENVLQLSRRGQAELQLLDLSPWLQAFVRDWRERARPN
QQLHLRIENDWLKTHADPQQLTQVLNNLLENGLRYSAQLHEQAEVWLTLSRDQKNDLPTLEVLDNGPGVAPEQLQHLFEP
FFTTESQGTGLGLYLSRELCESNRARLDYSRRQGGSCFRITFAHVHKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=628027 LOY63_RS04205 WP_010451841.1 940542..942131(-) (pilS) [Pseudomonas asplenii strain B21-058]
GTGACCGCTGAGACCTTCAGTCTCGGCGGTGCCCAGGCGCAACGCCTGCTGCGGCTCTATAACCTCTATCGTTTGAGCAT
CGGCATCACCCTGGTCCTGCTGATCTCCAGCAAAATGGATGACAAGCTGCTGGAACTGACCGATGGCGAACTGTTTCGCA
CCGGCAGCTGGATCTACCTGATCCTCAATATCCTGGTGGTGGTGCTGCTGGAAAACCCCAAACGCCAGGCACAGGTCTTC
GGCCTCGCGCTGGCCGACGCGGTGATGCTCTCGGGGCTGTTCTACGCGGCGGGAGGCACCCCAAGCGGTCTGGGCAACCT
GTTGATCGCTTCGGTCGCCATCAGCAATGTGTTGCTGCGTGGGCGCATGGGTCTTCTGATCGCGGCCATTTCAGCCATCG
GCATCATCTACCTGACCTTTTACCTGAGCTTCAGTCGTCCGGCGGCCGCCAACTATTATGTGCAGGCCGGGCTGCTCGGC
GTGCTGTGCTTCGCCGCCTCGTTCCTGGTCCAGGGCCTGACACGCCTGCTGGACGTGAGCGAAACCCTCGCCGAACAGCG
CGCCAGCGACGTCACCAAGCTTGAAGAACTCAATGCGCTGATCCTGCAACGCATGCACACCGGCATCCTGGTGCTCGACG
CTGAATATCGCGTGCAACTGGCCAACCAGAGCGTCCTGACTCTGCTCGGCCAGGAACATCTGCACGGACGCCTGATCGAA
ACTTACTCACCGCAGCTGATCGCCGGCCTGCAACTGTGGCAAAGCAACCCGACCTTGCGCCCAAAAAGCCTGAAGGTCGT
CGGCAGCAGCACGGTCCTGCAACCCAGCTTCATTGCCCTGCAGCGGGGCGAGCAGCAAGAGACGCTGATTTTCCTCGAGG
ACCAGTCGAAAATCACCCAGCAGGCCCAACAGCTCAAGCTTGTTGCCCTGGGCCGGCTGACCGCCGGGATCGCCCACGAA
ATCCGCAACCCGCTGGGCGCCATCAGCCATGCCGCCCAGTTGCTGCAGGAGTCGGAAGAGCTGCACGGTCCCGACCGTCG
CCTCACACAAATCATCCAGGACCAATCCAAGCGCATGAATCTGGTGATCGAGAACGTGCTGCAGCTGTCGCGACGAGGCC
AGGCCGAACTGCAATTGCTCGACCTGAGTCCCTGGCTGCAAGCCTTTGTAAGGGATTGGCGCGAAAGAGCCCGCCCCAAC
CAGCAATTGCACCTGAGAATCGAGAACGACTGGCTGAAAACCCACGCCGATCCACAGCAACTGACCCAGGTGCTGAACAA
CCTGCTGGAAAACGGCCTGCGCTACAGCGCCCAGTTGCATGAGCAGGCCGAAGTCTGGCTGACCTTGTCGCGGGATCAGA
AGAATGACCTGCCCACCCTCGAAGTCCTCGACAACGGCCCGGGCGTCGCCCCGGAACAACTGCAACACCTGTTCGAACCG
TTCTTCACCACCGAAAGCCAGGGCACGGGCCTGGGCCTGTACCTGTCCCGCGAGTTGTGCGAAAGCAATCGGGCCCGCCT
AGACTATTCAAGACGCCAAGGCGGCAGTTGCTTTCGCATCACCTTCGCTCACGTACATAAACAGAGTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

61.887

100

0.62