Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   LOY50_RS24500 Genome accession   NZ_CP087198
Coordinates   5494880..5496226 (+) Length   448 a.a.
NCBI ID   WP_253469484.1    Uniprot ID   -
Organism   Pseudomonas sp. B21-010     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5489880..5501226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY50_RS24475 (LOY50_24425) pgeF 5490095..5490820 (-) 726 WP_253469478.1 peptidoglycan editing factor PgeF -
  LOY50_RS24480 (LOY50_24430) rluD 5490817..5491779 (-) 963 WP_003205696.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LOY50_RS24485 (LOY50_24435) - 5491930..5492946 (+) 1017 WP_003205698.1 outer membrane protein assembly factor BamD -
  LOY50_RS24490 (LOY50_24440) - 5493071..5493304 (+) 234 WP_014340265.1 PP0621 family protein -
  LOY50_RS24495 (LOY50_24445) pilS 5493294..5494883 (+) 1590 WP_258689404.1 nitrogen regulation protein NR(II) Regulator
  LOY50_RS24500 (LOY50_24450) pilR 5494880..5496226 (+) 1347 WP_253469484.1 sigma-54 dependent transcriptional regulator Regulator
  LOY50_RS24505 (LOY50_24455) - 5496318..5496683 (-) 366 WP_253469487.1 DUF6124 family protein -
  LOY50_RS24510 (LOY50_24460) - 5496995..5497183 (+) 189 WP_253478679.1 nucleoid-structuring protein H-NS -
  LOY50_RS24515 (LOY50_24465) - 5497505..5497645 (-) 141 WP_258691289.1 hypothetical protein -
  LOY50_RS24520 (LOY50_24470) thiO 5497903..5499003 (-) 1101 WP_258689405.1 glycine oxidase ThiO -
  LOY50_RS24525 (LOY50_24475) - 5499060..5499461 (-) 402 WP_018600956.1 type IV pilin protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 50069.47 Da        Isoelectric Point: 5.5779

>NTDB_id=627936 LOY50_RS24500 WP_253469484.1 5494880..5496226(+) (pilR) [Pseudomonas sp. B21-010]
MNNRSRQRILIVDDEPDIRELLDITLGRMKLDTRSAKNLAEAQALLAGDTFDLCLTDMRLPDGTGLELVQHIQQRYPQLP
VAMITAYGSLETAIDALKAGAFDFLTKPVDLGRLRELVTSALRLPPVATPGTTLERSLLGDSPPMLSVRKQIEKLARSQA
PVYISGESGCGKELVARLIHEQGPRANLPFVPVNCGAIPTELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRAVGGQQEEVVDVRILCATHKDLDGEVAAGRFRQDLYYRLNVIELRVPPLRERREDIELLA
NHMLQRLAANAGSPPVKLHPQALDALRNYRFPGNVRELENMLERAYTLCEQQQIEADDLRLAEGNSTTEAGNPDLMQVDN
LEDYLEDVERKLILQALEETRWNRTAAAQRLKLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=627936 LOY50_RS24500 WP_253469484.1 5494880..5496226(+) (pilR) [Pseudomonas sp. B21-010]
TTGAATAATCGCTCACGGCAACGAATCCTGATCGTCGATGACGAACCGGACATCCGCGAACTCCTGGACATCACCCTGGG
CCGGATGAAACTCGACACCCGCAGCGCCAAGAACCTTGCCGAGGCCCAAGCCCTGCTGGCGGGGGACACCTTCGACCTGT
GCCTGACCGACATGCGCCTGCCCGATGGCACCGGCCTGGAACTGGTGCAACACATCCAGCAACGCTACCCCCAACTGCCC
GTGGCGATGATCACCGCCTATGGCAGCCTGGAAACCGCCATCGACGCCCTCAAGGCTGGCGCCTTCGACTTCCTGACCAA
GCCGGTAGACCTGGGTCGGCTGCGGGAGCTGGTCACCAGCGCCCTGCGCCTGCCGCCGGTCGCCACGCCAGGCACCACCC
TCGAGCGCAGCCTGCTGGGCGACTCGCCGCCGATGCTCAGCGTGCGCAAGCAGATCGAAAAACTCGCCCGCAGCCAGGCA
CCGGTGTACATCAGCGGGGAATCGGGCTGCGGCAAGGAGTTGGTCGCCCGTCTGATCCACGAACAAGGCCCCCGGGCCAA
CCTGCCCTTTGTACCGGTCAACTGTGGGGCAATTCCCACGGAGCTGATGGAAAGTGAGTTTTTCGGCCATCGAAAAGGCA
GCTTCAGCGGCGCCATCGAGGACAAGCCCGGGCTGTTCCAGGCTGCCCATGGCGGGACCTTGTTCCTCGATGAAGTGGCC
GATCTGCCCTTGGCGATGCAGGTCAAGCTGTTGCGAGCCATCCAGGAAAAAGCCGTGCGCGCCGTTGGCGGCCAGCAGGA
AGAAGTGGTGGATGTGCGCATCCTCTGCGCCACCCACAAGGACCTGGACGGCGAAGTCGCCGCCGGGCGCTTTCGCCAGG
ATTTGTATTACCGGCTGAACGTCATCGAACTGCGCGTCCCGCCGTTGCGCGAACGCCGCGAAGACATCGAGCTGCTGGCC
AATCACATGCTTCAGCGCCTGGCAGCCAACGCCGGTAGTCCACCGGTCAAGTTGCATCCCCAGGCGTTGGACGCTCTCAG
GAATTACCGCTTCCCGGGCAACGTGCGGGAACTGGAGAACATGCTTGAACGGGCCTACACCCTTTGCGAACAGCAGCAGA
TTGAAGCGGATGACCTGCGCCTGGCCGAGGGCAATAGTACTACTGAGGCAGGCAATCCCGATTTGATGCAGGTCGACAAC
CTGGAGGATTACCTGGAAGACGTTGAGCGCAAGCTCATCCTCCAGGCGTTGGAGGAAACCCGCTGGAACCGCACGGCGGC
GGCGCAGCGGCTGAAGTTGTCGTTTCGGTCGATGCGGTATCGGTTAAAGAAGCTTGGGCTGGATTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(139-304)

Bacterial regulatory protein, Fis family (HTH_8)

(405-445)

Response regulator receiver domain (Response_reg)

(9-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

78.153

99.107

0.775
  pilR Acinetobacter baumannii strain A118

50.545

100

0.518