Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   LOY50_RS24495 Genome accession   NZ_CP087198
Coordinates   5493294..5494883 (+) Length   529 a.a.
NCBI ID   WP_258689404.1    Uniprot ID   -
Organism   Pseudomonas sp. B21-010     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5488294..5499883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY50_RS24475 (LOY50_24425) pgeF 5490095..5490820 (-) 726 WP_253469478.1 peptidoglycan editing factor PgeF -
  LOY50_RS24480 (LOY50_24430) rluD 5490817..5491779 (-) 963 WP_003205696.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LOY50_RS24485 (LOY50_24435) - 5491930..5492946 (+) 1017 WP_003205698.1 outer membrane protein assembly factor BamD -
  LOY50_RS24490 (LOY50_24440) - 5493071..5493304 (+) 234 WP_014340265.1 PP0621 family protein -
  LOY50_RS24495 (LOY50_24445) pilS 5493294..5494883 (+) 1590 WP_258689404.1 nitrogen regulation protein NR(II) Regulator
  LOY50_RS24500 (LOY50_24450) pilR 5494880..5496226 (+) 1347 WP_253469484.1 sigma-54 dependent transcriptional regulator Regulator
  LOY50_RS24505 (LOY50_24455) - 5496318..5496683 (-) 366 WP_253469487.1 DUF6124 family protein -
  LOY50_RS24510 (LOY50_24460) - 5496995..5497183 (+) 189 WP_253478679.1 nucleoid-structuring protein H-NS -
  LOY50_RS24515 (LOY50_24465) - 5497505..5497645 (-) 141 WP_258691289.1 hypothetical protein -
  LOY50_RS24520 (LOY50_24470) thiO 5497903..5499003 (-) 1101 WP_258689405.1 glycine oxidase ThiO -
  LOY50_RS24525 (LOY50_24475) - 5499060..5499461 (-) 402 WP_018600956.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58904.62 Da        Isoelectric Point: 7.1770

>NTDB_id=627935 LOY50_RS24495 WP_258689404.1 5493294..5494883(+) (pilS) [Pseudomonas sp. B21-010]
MSAEASSPREKQAQRLLRLYHLYRLSIGITLVLLISSKLDNRLLEFANDDLLRSGSWLYLVLNILLVVFLENTRRPARLF
GLALTDVLLLSWLFFVAGGVPSAIGNLLIVSVAIGNTLLRGRIGLLIAAVATLGIVGSSFFLGLSDSNRPSSYLQAGTLG
ALCFAAALLVQGLTRRLEASETLAEQRASEVIGLEALNALILQRMRTGILVLDRERRVQLANESALNLLGMHDLVGQQLD
DYSTALVERMQLWRNNPSLRPSSLTVTGTGLTLQPSFIALGHQDQQQILVFLEDLAQVAQQAQQLKLASLGRLTAGIAHE
IRNPLGAISHAAQLLRESEELNDADRRLTQIIQDHSQRMNRVIENVLQLSRRQQTTPQRLDLRTWLDQFVRQARESMAEH
QHLHLSIDPGDYTTLMDPDQLTQVLDNLLRNAWRHSAMAHEQAEAWLKLFIDPHSQLSTLDIIDNGPGVTPEQQAHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKPRQGGGCFRITFAHGRKQI

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=627935 LOY50_RS24495 WP_258689404.1 5493294..5494883(+) (pilS) [Pseudomonas sp. B21-010]
GTGAGCGCTGAGGCCTCAAGCCCACGCGAAAAACAGGCGCAGCGCCTGCTGCGTCTCTATCACCTCTATCGTCTGAGCAT
CGGCATCACCCTGGTGCTGCTGATCTCCAGCAAACTGGACAACCGCCTGCTGGAGTTCGCCAATGACGACCTGCTGCGCA
GTGGCAGTTGGTTGTACCTGGTGCTGAATATCCTGCTGGTGGTGTTCCTGGAGAACACCCGCCGCCCTGCCCGGCTGTTC
GGCCTGGCCCTGACTGACGTGCTGCTGCTCTCGTGGCTGTTCTTCGTCGCGGGCGGTGTGCCCAGTGCCATCGGCAACCT
GCTCATTGTCTCGGTGGCCATCGGCAACACGCTGCTGCGAGGCCGCATCGGCCTGTTGATCGCGGCCGTCGCCACCCTCG
GCATCGTCGGTTCGAGTTTCTTTCTTGGCTTGAGCGACTCGAACCGTCCCAGCAGTTATTTGCAGGCCGGCACCCTCGGG
GCACTGTGCTTTGCCGCCGCGCTGTTGGTGCAAGGCCTGACCCGACGCTTGGAAGCCAGCGAAACCCTGGCCGAGCAACG
GGCCAGCGAGGTGATCGGCCTGGAAGCGCTCAACGCCCTGATCCTGCAACGCATGCGCACCGGCATCCTGGTGCTTGACC
GTGAGCGTCGGGTGCAATTGGCCAACGAAAGCGCGCTGAACCTGCTGGGCATGCACGACCTGGTGGGCCAGCAGCTCGAC
GATTACTCCACCGCCCTGGTCGAACGCATGCAATTGTGGCGAAACAACCCCAGCCTGCGCCCTTCCAGCCTGACCGTTAC
CGGCACGGGCCTGACCCTGCAACCGAGCTTCATCGCCTTGGGGCATCAAGATCAGCAGCAGATCCTGGTGTTCCTTGAAG
ACCTGGCCCAGGTTGCCCAGCAGGCCCAGCAGTTGAAACTCGCTTCCCTCGGGCGCCTCACTGCTGGCATCGCCCATGAA
ATCCGCAACCCCTTGGGCGCCATCAGCCACGCGGCGCAATTACTGCGCGAATCCGAGGAACTGAACGACGCGGATCGGCG
TCTGACGCAGATTATTCAAGATCACTCCCAACGAATGAACCGCGTCATTGAAAACGTCCTGCAGCTGTCTCGCCGCCAGC
AAACCACCCCCCAACGCCTCGACCTGCGGACCTGGCTCGACCAGTTCGTCCGGCAGGCCCGCGAAAGCATGGCCGAGCAC
CAGCACTTGCACCTGAGCATCGACCCGGGTGACTACACCACGCTGATGGACCCCGACCAGTTGACCCAGGTACTCGACAA
CCTGCTGCGCAACGCCTGGCGCCACAGCGCCATGGCCCACGAACAGGCCGAGGCCTGGCTGAAACTGTTCATCGACCCCC
ACAGCCAGCTGTCCACGCTGGACATCATCGACAACGGCCCCGGTGTAACCCCCGAGCAGCAGGCGCATTTGTTCGAACCC
TTCTTTACCACCAGCAGCCAGGGCACCGGCCTTGGGCTCTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCCCGCCT
AGACTTCAAACCACGCCAAGGCGGCGGTTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAGATTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60.985

99.811

0.609