Detailed information NTG0627930

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: LOY50_RS20320
• Genome accession: NZ_CP087198
• Coordinates: 4600780..4603026 (-)
• Length: 748 a.a.
• NCBI ID: WP_253476874.1
• Uniprot ID: -
• Organism: Pseudomonas sp. B21-010
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4595780..4608026

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LOY50_RS20285 (LOY50_20240)	murB	4596164..4597183 (-)	1020	WP_253476868.1	UDP-N-acetylmuramate dehydrogenase	-
LOY50_RS20290 (LOY50_20245)	-	4597180..4597644 (-)	465	WP_014339516.1	low molecular weight protein-tyrosine-phosphatase	-
LOY50_RS20295 (LOY50_20250)	kdsB	4597644..4598408 (-)	765	WP_053189634.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
LOY50_RS20300 (LOY50_20255)	-	4598405..4598590 (-)	186	WP_003174668.1	Trm112 family protein	-
LOY50_RS20305 (LOY50_20260)	lpxK	4598614..4599624 (-)	1011	WP_258689035.1	tetraacyldisaccharide 4'-kinase	-
LOY50_RS20310 (LOY50_20265)	-	4599624..4600052 (-)	429	WP_214509707.1	biopolymer transporter ExbD	-
LOY50_RS20315 (LOY50_20270)	exbB	4600049..4600684 (-)	636	WP_170845976.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
LOY50_RS20320 (LOY50_20275)	comA	4600780..4603026 (-)	2247	WP_253476874.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
LOY50_RS20325 (LOY50_20280)	-	4603171..4603686 (+)	516	WP_003204298.1	DUF2062 domain-containing protein	-
LOY50_RS20330 (LOY50_20285)	-	4603780..4604559 (-)	780	WP_003204300.1	ABC transporter permease	-
LOY50_RS20335 (LOY50_20290)	-	4604562..4605494 (-)	933	WP_214509705.1	ABC transporter ATP-binding protein	-
LOY50_RS20340 (LOY50_20295)	-	4605631..4606254 (-)	624	WP_258689037.1	glutathione S-transferase family protein	-
LOY50_RS20345 (LOY50_20300)	-	4606299..4606958 (-)	660	WP_258689038.1	transglutaminase family protein	-

Sequence

Protein

• Length: 748 a.a.
• Molecular weight: 81066.21 Da
• Isoelectric Point: 9.5355

>NTDB_id=627930 LOY50_RS20320 WP_253476874.1 4600780..4603026(-) (comA) [Pseudomonas sp. B21-010]
MRTGLVALALGLLAPIFLPALPPLWLIAAMPVLALMALPFRTYPLGFFLFGLAWACLSAQFALDDRLPIALDGETRWVEG
RVVGLPQQGEGVVRFELADVHSRRSRLPTAMRLAWFGGPPVNSGERWRLAVKLKRPSGLLNPHGFDYAAWLLSRGIGATG
TIKDGHLLQAARGAWRDEVRQALAQVDAHGRSGALAALVLGDGGGLSREDWQVLQDTGTVHLLVISGQHIGLLAGLVYLL
VAGAARYGLWPVGLAWLPWACGLAFCAALGYGLLAGFEVPVRRACAMIGLVLLWRLRFKQPDPWWAWLLAFVGVLVFDPL
ASLRPGFWLSFAAVAILMFTFGARLGPWRWWQTWTRAQWLVALGLCPLLLIVGLPVSLSGPLVNLLAVPWISLLVLPPAL
LGTALLPVPFMGEGLLWIAGGLLDLLFKGLTLVAGRMPAWVPAAVPPWALGIAAFGAFLLLLPKGVPLRVLGWPMVLLMV
FPPQEHLPQGHAEIWQLDVGQGLAVLVRTRRHALLYDAGPRFGEADAGERVVLPTLRKLGVRGLDLMLLSHADADHAGGA
RAVRNGLPTMEVISGDPDALPAELLAGPCDSGRRWEWDGVRFELWRWASAVESNQKSCVLLVEAGGERLLLTGDIDTPAE
RALLDEALAVPIQWLAAPHHGSRSSSSMALLSRLQPHSVLISRGQGNAFGHPHPQVMARYRRSGLAVYDSAEQGAIRLQL
GAFELPRTEAGHRRYWRDPPAVGPAGQY

Nucleotide

• Length: 2247 bp

>NTDB_id=627930 LOY50_RS20320 WP_253476874.1 4600780..4603026(-) (comA) [Pseudomonas sp. B21-010]
ATGCGCACAGGGTTAGTCGCGCTTGCACTGGGGCTGTTGGCCCCGATTTTTTTGCCGGCACTGCCGCCGTTGTGGCTGAT
TGCAGCCATGCCGGTGCTGGCGCTGATGGCGTTGCCGTTTCGAACCTATCCGCTGGGTTTTTTCCTGTTCGGGCTGGCCT
GGGCCTGCCTGTCGGCGCAGTTTGCGCTGGACGACCGGTTACCCATCGCGCTCGACGGCGAAACCCGCTGGGTCGAGGGG
CGAGTGGTCGGTTTGCCGCAACAGGGCGAAGGCGTGGTGCGCTTCGAACTGGCCGATGTCCATTCACGCCGTAGCCGTCT
ACCGACGGCGATGCGCCTCGCCTGGTTCGGTGGGCCGCCGGTCAACAGCGGCGAACGATGGCGATTGGCGGTGAAGCTCA
AGCGGCCCAGTGGGCTGCTGAACCCGCACGGTTTCGACTATGCCGCCTGGTTGTTGAGCCGCGGCATCGGCGCGACTGGT
ACGATCAAGGATGGCCATCTCCTGCAAGCGGCCCGGGGGGCCTGGCGCGATGAGGTGCGCCAGGCCCTGGCACAGGTCGA
TGCCCACGGCCGCTCCGGTGCGCTGGCGGCACTGGTCCTGGGCGACGGCGGCGGGTTGAGTCGCGAGGATTGGCAGGTCC
TGCAAGACACCGGCACCGTCCACTTGCTGGTGATCTCCGGGCAACACATCGGCCTGCTTGCCGGCCTGGTGTACCTGTTG
GTGGCCGGTGCGGCGCGTTATGGCCTGTGGCCGGTGGGTCTGGCCTGGTTGCCTTGGGCCTGTGGGCTGGCCTTCTGTGC
CGCCCTGGGCTACGGCTTGCTCGCCGGCTTCGAGGTGCCGGTGCGGCGGGCCTGCGCGATGATCGGCCTGGTGTTGCTGT
GGCGCTTGCGTTTCAAACAGCCAGATCCGTGGTGGGCATGGCTGCTGGCCTTCGTCGGGGTGCTGGTGTTCGACCCGCTT
GCCAGCTTGCGGCCGGGGTTCTGGTTGTCGTTTGCAGCCGTGGCCATCTTGATGTTCACCTTTGGCGCTCGCCTGGGGCC
CTGGCGCTGGTGGCAAACCTGGACCCGTGCCCAGTGGCTGGTTGCGCTTGGCCTGTGTCCGTTGTTGTTGATCGTGGGCT
TGCCGGTCAGCCTCAGCGGGCCGTTGGTGAACTTGCTGGCGGTGCCCTGGATCAGCCTGTTGGTATTGCCGCCAGCGCTG
CTTGGCACGGCATTGTTGCCGGTGCCGTTCATGGGCGAAGGCCTGCTGTGGATCGCCGGCGGGCTGCTCGATCTGCTGTT
CAAGGGGCTGACGCTGGTTGCCGGACGAATGCCAGCCTGGGTTCCTGCCGCGGTTCCGCCTTGGGCCTTGGGTATCGCCG
CCTTCGGTGCTTTTTTGCTGCTGTTGCCCAAAGGTGTGCCGCTACGTGTACTGGGGTGGCCGATGGTGTTGCTGATGGTT
TTTCCACCGCAAGAACACCTGCCGCAAGGGCACGCCGAGATCTGGCAGTTGGACGTGGGCCAAGGGCTGGCGGTGCTGGT
GCGGACCCGGCGGCACGCCCTGCTTTACGACGCCGGGCCGCGCTTTGGCGAGGCTGACGCGGGCGAGCGGGTCGTACTGC
CGACCTTGCGCAAACTGGGTGTGCGCGGCTTGGACCTGATGTTGCTAAGCCATGCCGACGCCGATCACGCTGGCGGTGCC
CGCGCCGTGCGCAATGGGCTGCCGACGATGGAGGTGATCAGCGGCGATCCCGACGCGCTGCCCGCCGAGCTGCTGGCCGG
GCCTTGCGACAGTGGCAGACGCTGGGAATGGGACGGGGTCAGGTTCGAGCTATGGCGGTGGGCCTCTGCTGTCGAGAGCA
ACCAGAAGTCCTGCGTCTTGCTGGTGGAGGCCGGCGGTGAACGCCTGCTCCTGACCGGCGATATCGACACCCCGGCCGAG
CGCGCCTTGCTCGACGAGGCCCTGGCGGTGCCGATCCAGTGGCTGGCCGCGCCGCATCACGGCAGCCGCAGTTCGTCGTC
GATGGCATTGCTGTCGCGTCTCCAGCCGCATTCGGTATTGATCTCCCGAGGGCAGGGCAACGCGTTCGGCCACCCTCACC
CCCAGGTGATGGCTCGGTATCGACGTTCGGGCCTGGCGGTCTACGACAGCGCCGAGCAGGGCGCCATTCGTCTGCAACTG
GGCGCTTTCGAACTGCCGCGCACCGAGGCCGGGCATCGCCGCTACTGGCGTGATCCGCCAGCCGTCGGGCCAGCGGGGCA
ATATTGA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-676)

• Domain of unknown function (DUF4131) (DUF4131) (22-165)

• Competence protein (Competence) (198-464)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	61.592	95.722	0.59
comA	Ralstonia pseudosolanacearum GMI1000	32.113	100	0.364