Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LOY50_RS20315 Genome accession   NZ_CP087198
Coordinates   4600049..4600684 (-) Length   211 a.a.
NCBI ID   WP_170845976.1    Uniprot ID   -
Organism   Pseudomonas sp. B21-010     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4595049..4605684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY50_RS20280 (LOY50_20235) - 4595427..4595897 (-) 471 WP_258689034.1 (2Fe-2S)-binding protein -
  LOY50_RS20285 (LOY50_20240) murB 4596164..4597183 (-) 1020 WP_253476868.1 UDP-N-acetylmuramate dehydrogenase -
  LOY50_RS20290 (LOY50_20245) - 4597180..4597644 (-) 465 WP_014339516.1 low molecular weight protein-tyrosine-phosphatase -
  LOY50_RS20295 (LOY50_20250) kdsB 4597644..4598408 (-) 765 WP_053189634.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LOY50_RS20300 (LOY50_20255) - 4598405..4598590 (-) 186 WP_003174668.1 Trm112 family protein -
  LOY50_RS20305 (LOY50_20260) lpxK 4598614..4599624 (-) 1011 WP_258689035.1 tetraacyldisaccharide 4'-kinase -
  LOY50_RS20310 (LOY50_20265) - 4599624..4600052 (-) 429 WP_214509707.1 biopolymer transporter ExbD -
  LOY50_RS20315 (LOY50_20270) exbB 4600049..4600684 (-) 636 WP_170845976.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LOY50_RS20320 (LOY50_20275) comA 4600780..4603026 (-) 2247 WP_253476874.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LOY50_RS20325 (LOY50_20280) - 4603171..4603686 (+) 516 WP_003204298.1 DUF2062 domain-containing protein -
  LOY50_RS20330 (LOY50_20285) - 4603780..4604559 (-) 780 WP_003204300.1 ABC transporter permease -
  LOY50_RS20335 (LOY50_20290) - 4604562..4605494 (-) 933 WP_214509705.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22855.00 Da        Isoelectric Point: 8.0840

>NTDB_id=627929 LOY50_RS20315 WP_170845976.1 4600049..4600684(-) (exbB) [Pseudomonas sp. B21-010]
MWELVKSGGWMMLPIILSSIVALGIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKDKLKELRASSPLGEVLAAGLAN
SKHGREIMKECIEEAAARVIHELERYINTLGTIAAMSPLLGLLGTVLGMIDIFSAFTGSGMTTNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAGGKK

Nucleotide


Download         Length: 636 bp        

>NTDB_id=627929 LOY50_RS20315 WP_170845976.1 4600049..4600684(-) (exbB) [Pseudomonas sp. B21-010]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGTGGCACTGGGTATCGTTGC
CGAACGCCTGTGGACCCTGCGGGCCAGCCGCGTGACCCCGGAGCATCTGCTCGGGCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTGAACAAGGACAAGCTCAAGGAGCTGCGAGCCAGTTCGCCCTTGGGGGAAGTCCTCGCCGCCGGCCTGGCGAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCCGCGCGGGTCATCCATGAGCTGGAACGCTACAT
CAATACCCTGGGCACCATCGCCGCCATGTCCCCGCTGCTGGGCCTGCTGGGTACGGTGCTGGGCATGATCGACATCTTCA
GTGCGTTTACCGGCTCCGGCATGACCACTAACGCCGCAGTACTGGCGGGGGGTATTTCCAAGGCTTTGATCACCACCGCC
GCCGGCCTGATGGTGGGTATTCCGGCCGTGTTCTTCCATCGGTTCCTGCAACGCCGCGTCGACGAGTTGGTGGTCGGCAT
GGAGCAGGAAGCGATCAAGCTGGTCGAGGTGGTGCAAGGTGACCGTGACGTGGACCTGGCTGGGGGCAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.762

99.526

0.844