Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   LOY37_RS19360 Genome accession   NZ_CP087197
Coordinates   4259069..4261291 (-) Length   740 a.a.
NCBI ID   WP_258715543.1    Uniprot ID   -
Organism   Pseudomonas sp. B21-012     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4254069..4266291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY37_RS19325 (LOY37_19310) murB 4254460..4255479 (-) 1020 WP_258715540.1 UDP-N-acetylmuramate dehydrogenase -
  LOY37_RS19330 (LOY37_19315) - 4255476..4255940 (-) 465 WP_258715541.1 low molecular weight protein-tyrosine-phosphatase -
  LOY37_RS19335 (LOY37_19320) kdsB 4255940..4256704 (-) 765 WP_195884755.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LOY37_RS19340 (LOY37_19325) - 4256701..4256886 (-) 186 WP_038994143.1 Trm112 family protein -
  LOY37_RS19345 (LOY37_19330) lpxK 4256925..4257935 (-) 1011 WP_258715542.1 tetraacyldisaccharide 4'-kinase -
  LOY37_RS19350 (LOY37_19335) - 4257935..4258366 (-) 432 WP_045195189.1 biopolymer transporter ExbD -
  LOY37_RS19355 (LOY37_19340) exbB 4258363..4258998 (-) 636 WP_176794233.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LOY37_RS19360 (LOY37_19345) comA 4259069..4261291 (-) 2223 WP_258715543.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LOY37_RS19365 (LOY37_19350) - 4261435..4261977 (+) 543 WP_045195193.1 DUF2062 domain-containing protein -
  LOY37_RS19370 (LOY37_19355) - 4261945..4262724 (-) 780 WP_045195195.1 ABC transporter permease -
  LOY37_RS19375 (LOY37_19360) - 4262721..4263653 (-) 933 WP_045195197.1 ABC transporter ATP-binding protein -
  LOY37_RS19380 (LOY37_19365) - 4263808..4264431 (-) 624 WP_123567236.1 glutathione S-transferase family protein -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 80935.95 Da        Isoelectric Point: 9.5003

>NTDB_id=627908 LOY37_RS19360 WP_258715543.1 4259069..4261291(-) (comA) [Pseudomonas sp. B21-012]
MRTGMLALALGLLSLGFLPALPPVWILVLLAIAGLCCLPTRLWPAGLFLLGLSWACVSAQWALDERLAAQFDGRTLWIEG
RVTGLPEQGARSVRFELSDAESRRGQLPRRMQLSWFGGPAVNSGEYWRLAVSLKRPAGLLNPHGPDQEASLLARRIGATG
SVKAGERLLPATAAWRDDLRQRLLSVDAQGREAALVALILGDGGALARQDWQALQATGTVHLLVISGQHIGLLAGLVYAL
IAGLARLGWWPQRLPWLPWACALAFAAALAYGLLAGFQVPVQRACMMLAMVLLWRLRFRHLGVGLPLLLALDAVLLWEPL
ASLQPGFWLSFMAVAILIFTFSGRLGAWNPWLAWSRAQWLIAIGLLPVLLAQGLPVSLTAPLINLLAVPWISLAVLPMAL
LGTVLLPVPVLGEGLLWLAGGLLDGLFRLLAHVAVWQPAWMPEPLPFWAWLLVCLGALLLLLPRGIPMRVLGWPLLLLAV
FAPRERVPQGQVEVWQLDVGQGLAFVLRTRHHAMLYDAGPAMGDFDLGERVVLPSLRKLGVSKLDLMLLSHADADHAGGA
RAVQRGLPVLRVQAGEAAALPEVLQAQPCSSGERWQWDGVNFSLWQWQDAGDSNQDSCVLLVEANGEKLLLTGDLDARGE
RAWARDWQATTVDWLQSPHHGSRSSSSEALLKATTPRGVLISRGRYNAFGHPHPEVMARYRTHGIQAYDNVDQGALRLRL
GVFGEPEGLRAQRRFWREPR

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=627908 LOY37_RS19360 WP_258715543.1 4259069..4261291(-) (comA) [Pseudomonas sp. B21-012]
ATGCGCACAGGGATGTTGGCGCTTGCACTCGGGCTGCTCAGCCTCGGGTTCCTGCCGGCTTTGCCGCCCGTCTGGATACT
TGTCCTGCTGGCAATTGCCGGGCTTTGCTGCCTGCCTACGCGGCTGTGGCCCGCCGGGCTGTTTCTGCTGGGCTTGAGCT
GGGCGTGCGTCTCGGCGCAATGGGCGTTGGATGAGCGCCTGGCGGCGCAGTTCGATGGCCGTACCCTGTGGATAGAGGGC
CGGGTTACTGGTTTGCCGGAGCAGGGTGCGCGCTCGGTGAGGTTCGAGTTGAGCGATGCCGAGTCGCGCCGGGGGCAATT
GCCAAGGCGCATGCAGCTCAGCTGGTTCGGCGGCCCGGCGGTCAACAGCGGTGAATACTGGCGTTTGGCAGTCAGCCTCA
AGCGCCCCGCAGGCTTGCTCAATCCTCACGGCCCGGACCAGGAGGCCAGTTTGTTGGCCCGGCGCATCGGCGCCACCGGC
AGCGTCAAAGCCGGCGAGCGGCTGCTGCCGGCAACGGCGGCCTGGCGGGATGATCTGCGCCAGCGCTTGCTCAGCGTTGA
TGCCCAGGGCCGGGAGGCGGCGCTGGTGGCCTTGATACTCGGCGATGGCGGCGCTTTGGCGCGCCAGGACTGGCAAGCGC
TGCAGGCCACCGGCACGGTGCACTTGCTGGTGATTTCCGGCCAGCATATTGGCCTGTTGGCCGGGCTGGTATACGCCTTG
ATTGCCGGGCTGGCGCGCCTGGGCTGGTGGCCGCAACGGCTACCCTGGCTGCCTTGGGCCTGTGCGCTGGCCTTTGCCGC
AGCACTGGCCTATGGCTTGCTGGCCGGGTTTCAGGTGCCGGTGCAGCGCGCCTGCATGATGCTGGCCATGGTGCTGCTCT
GGCGCCTGCGCTTTCGTCACCTGGGTGTCGGGCTGCCGTTGTTGCTGGCGCTCGATGCAGTGCTGCTGTGGGAACCATTG
GCCAGCTTGCAGCCGGGCTTCTGGCTGTCGTTCATGGCCGTGGCCATTCTGATCTTCACCTTCAGCGGCCGCCTTGGCGC
CTGGAACCCCTGGCTGGCCTGGAGTCGCGCCCAGTGGTTGATCGCCATCGGCTTGTTGCCGGTGCTGCTGGCGCAAGGTT
TGCCGGTGAGCCTGACGGCGCCGCTGATCAATCTGCTGGCAGTGCCGTGGATCAGCCTTGCGGTGTTGCCAATGGCGTTG
CTCGGCACTGTGTTGCTGCCGGTGCCGGTTCTGGGGGAAGGCTTGCTGTGGCTTGCCGGCGGCCTGCTCGACGGTTTGTT
TCGCTTGCTGGCGCATGTGGCGGTTTGGCAACCGGCCTGGATGCCAGAACCATTGCCGTTCTGGGCCTGGTTGCTGGTGT
GCCTGGGGGCATTGCTGCTGTTGTTGCCACGCGGCATACCGATGCGGGTGCTGGGCTGGCCATTGTTGCTGTTGGCGGTG
TTTGCGCCCCGGGAGCGCGTGCCGCAGGGGCAGGTAGAGGTCTGGCAGCTGGATGTCGGCCAGGGGTTGGCCTTTGTGCT
GCGCACCCGGCACCACGCCATGTTGTATGACGCCGGCCCGGCCATGGGCGATTTCGATCTGGGCGAGCGGGTAGTGCTTC
CCAGCTTGCGCAAGCTGGGGGTGAGCAAGCTCGACCTGATGTTGCTCAGCCACGCCGACGCCGATCACGCCGGGGGCGCC
CGCGCCGTGCAGCGCGGTTTGCCGGTGCTGCGGGTGCAGGCTGGTGAGGCTGCGGCCTTGCCTGAAGTGCTGCAAGCGCA
GCCGTGCAGCAGCGGCGAACGCTGGCAGTGGGACGGGGTGAATTTTTCACTGTGGCAGTGGCAGGATGCTGGCGACAGCA
ATCAGGATTCCTGTGTGCTGCTGGTCGAGGCAAATGGCGAAAAACTGCTGCTCACCGGCGATCTCGATGCCCGCGGCGAA
CGGGCCTGGGCGCGGGACTGGCAGGCGACCACGGTCGACTGGTTGCAATCGCCCCATCACGGCAGTCGCAGCTCCTCCAG
CGAGGCCTTGTTGAAGGCTACTACCCCGCGCGGCGTGCTGATCTCGCGCGGGCGCTACAACGCCTTCGGGCATCCGCACC
CGGAGGTCATGGCGCGCTATCGGACGCACGGTATTCAGGCCTATGACAATGTCGACCAAGGTGCCTTGCGCCTGCGCCTG
GGTGTGTTCGGCGAGCCTGAGGGGTTGCGTGCCCAGCGGCGTTTCTGGCGTGAACCGAGATGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-462)

Domain of unknown function (DUF4131) (DUF4131)

(22-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-680)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.798

98.243

0.597
  comA Ralstonia pseudosolanacearum GMI1000

33.294

100

0.38