Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LOY37_RS19355 Genome accession   NZ_CP087197
Coordinates   4258363..4258998 (-) Length   211 a.a.
NCBI ID   WP_176794233.1    Uniprot ID   -
Organism   Pseudomonas sp. B21-012     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4253363..4263998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY37_RS19325 (LOY37_19310) murB 4254460..4255479 (-) 1020 WP_258715540.1 UDP-N-acetylmuramate dehydrogenase -
  LOY37_RS19330 (LOY37_19315) - 4255476..4255940 (-) 465 WP_258715541.1 low molecular weight protein-tyrosine-phosphatase -
  LOY37_RS19335 (LOY37_19320) kdsB 4255940..4256704 (-) 765 WP_195884755.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LOY37_RS19340 (LOY37_19325) - 4256701..4256886 (-) 186 WP_038994143.1 Trm112 family protein -
  LOY37_RS19345 (LOY37_19330) lpxK 4256925..4257935 (-) 1011 WP_258715542.1 tetraacyldisaccharide 4'-kinase -
  LOY37_RS19350 (LOY37_19335) - 4257935..4258366 (-) 432 WP_045195189.1 biopolymer transporter ExbD -
  LOY37_RS19355 (LOY37_19340) exbB 4258363..4258998 (-) 636 WP_176794233.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LOY37_RS19360 (LOY37_19345) comA 4259069..4261291 (-) 2223 WP_258715543.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LOY37_RS19365 (LOY37_19350) - 4261435..4261977 (+) 543 WP_045195193.1 DUF2062 domain-containing protein -
  LOY37_RS19370 (LOY37_19355) - 4261945..4262724 (-) 780 WP_045195195.1 ABC transporter permease -
  LOY37_RS19375 (LOY37_19360) - 4262721..4263653 (-) 933 WP_045195197.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22860.07 Da        Isoelectric Point: 6.8759

>NTDB_id=627907 LOY37_RS19355 WP_176794233.1 4258363..4258998(-) (exbB) [Pseudomonas sp. B21-012]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFMGTGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=627907 LOY37_RS19355 WP_176794233.1 4258363..4258998(-) (exbB) [Pseudomonas sp. B21-012]
GTGTGGGAATTGGTCAAGTCCGGTGGCTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCTGCCATGGCGATCGTCGC
CGAGCGTCTCTGGACCTTGCGCGCCAGCCGGGTCACGCCACCGCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AACAGCTCACCAGTGACAAGCTCAAGGCCCTGCGCGCCGATTCGCCGCTGGGCGAGATCCTTGCCGCAGGCCTGGCCAAC
TCGCGCCATGGCCGCGAAATCATGAAGGAATGCATCGAAGAGGCCGCAGCGCGTGTCATTCACGAGCTGGAGCGCTACAT
CAACGCCCTGGGCACCATCGCCGCCATGGCGCCGCTGCTGGGCTTGCTCGGCACCGTGCTGGGCATGATCGACATCTTCA
GCGCCTTCATGGGTACCGGCATGACCACCAATGCCGCAGTGCTCGCCGGCGGTATCTCCAAGGCACTGATCACCACCGCG
GCCGGCCTGATGGTCGGTATTCCGTCGGTGTTCTTCCACCGTTTCCTGCAGCGTCGTATAGACGAGCTGGTGGTCGGTAT
GGAGCAGGAAGCGATCAAGCTGGTCGAAGTGGTGCAGGGCGACCGTGATGTCGACCTGGCCGAGGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.308

100

0.853