Detailed information NTG0627878

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: LOY38_RS08355
• Genome accession: NZ_CP087196
• Coordinates: 1838166..1840400 (+)
• Length: 744 a.a.
• NCBI ID: WP_258699600.1
• Uniprot ID: -
• Organism: Pseudomonas sp. B21-015
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1833166..1845400

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LOY38_RS08330 (LOY38_08325)	-	1834175..1834834 (+)	660	WP_258699596.1	transglutaminase family protein	-
LOY38_RS08335 (LOY38_08330)	-	1834878..1835501 (+)	624	WP_258699597.1	glutathione S-transferase family protein	-
LOY38_RS08340 (LOY38_08335)	-	1835634..1836566 (+)	933	WP_095634883.1	ABC transporter ATP-binding protein	-
LOY38_RS08345 (LOY38_08340)	-	1836563..1837342 (+)	780	WP_258699598.1	ABC transporter permease	-
LOY38_RS08350 (LOY38_08345)	-	1837514..1838029 (-)	516	WP_258699599.1	DUF2062 domain-containing protein	-
LOY38_RS08355 (LOY38_08350)	comA	1838166..1840400 (+)	2235	WP_258699600.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
LOY38_RS08360 (LOY38_08355)	exbB	1840498..1841133 (+)	636	WP_258699601.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
LOY38_RS08365 (LOY38_08360)	-	1841130..1841558 (+)	429	WP_258699602.1	biopolymer transporter ExbD	-
LOY38_RS08370 (LOY38_08365)	lpxK	1841558..1842568 (+)	1011	WP_258699603.1	tetraacyldisaccharide 4'-kinase	-
LOY38_RS08375 (LOY38_08370)	-	1842594..1842779 (+)	186	WP_007945752.1	Trm112 family protein	-
LOY38_RS08380 (LOY38_08375)	kdsB	1842776..1843540 (+)	765	WP_258699604.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
LOY38_RS08385 (LOY38_08380)	-	1843540..1844004 (+)	465	WP_258699605.1	low molecular weight protein-tyrosine-phosphatase	-
LOY38_RS08390 (LOY38_08385)	murB	1844001..1845020 (+)	1020	WP_258699606.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 744 a.a.
• Molecular weight: 81400.52 Da
• Isoelectric Point: 9.9432

>NTDB_id=627878 LOY38_RS08355 WP_258699600.1 1838166..1840400(+) (comA) [Pseudomonas sp. B21-015]
MRTGMMALALGLLALRFLPALPPAGLWLLLPVVGLMLLPFRTFPLAFLLFGFSWACANAQWALNDRLPLNLDGETRWVEG
RVTGLPQQAEGVVRFELTDSQSRRTKLPRHLRLAWYGGPPVNSGEHWRLAVKLKRPAGLLNPRAFDYDAWLLAQRIGATG
TVKDGQRLREAQWAWRDGIRQRLQAVDAQGRTGALTALVLGDGAGLSREDWQVLQDTGTVHLLVISGQHIGLLAGLVYLL
IAGLARYGAWPKGLPWLPWACGLAFVAALGYGLLAGFEVPVRRACLMIGLVLLWRLRFRHLGAWWPLLLALDGVLLLEPL
ASLQPGFWLSFAAVAVLIFTFGGRLGPWRWWQTWTRAQWLIAIGLGPLLLVLGLPISLSGPLTNLLAVPWISLVVLPPAL
LGTLLLPVPYVGEGLLWLAGGLIDLLFRGLVLVAGQLPAWVPAAVPLWVWALGTLGAFLLLLPRGVPLRPLGWPMLLLLV
FPPRHTLPEGMAEVWQLDVGQGLAILVRTRDHTLLYDAGPRFGDIDLGERVVLPSLRKLGVDGLDLMLISHADADHAGGA
RAIANAIPVKQVLSGDHLALPDELHAEGCESGQQWAWDGVKFQLWQWPSASESNQKSCVLQIEANGERLLLTGDIDSAAE
RALLDSPMAVPTDWLQAPHHGSRSSSSTALLSALQPKAVLISRGNGNSFGHPHPTVVARYQKRGVAIYDSAVQGAIRLQL
GRFAPPWTMLQERRFWRDPPPLSQ

Nucleotide

• Length: 2235 bp

>NTDB_id=627878 LOY38_RS08355 WP_258699600.1 1838166..1840400(+) (comA) [Pseudomonas sp. B21-015]
ATGCGCACAGGGATGATGGCGCTGGCGTTGGGTTTGCTGGCCCTGCGTTTTTTACCGGCGTTACCGCCGGCAGGGTTGTG
GCTGTTGTTGCCGGTAGTGGGATTGATGCTGCTGCCGTTTCGCACCTTTCCCCTGGCATTTTTGTTGTTCGGTTTCAGTT
GGGCTTGCGCGAACGCCCAGTGGGCGCTGAATGATCGCCTGCCGCTGAATCTCGATGGCGAGACTCGCTGGGTCGAAGGC
CGTGTGACGGGTTTGCCGCAGCAGGCCGAGGGCGTGGTGCGTTTCGAGCTGACGGACAGTCAGTCCCGTCGCACCAAGCT
GCCTCGGCACCTGCGTCTGGCCTGGTATGGCGGGCCGCCCGTCAACAGTGGCGAGCATTGGCGGCTGGCCGTCAAATTGA
AGCGTCCTGCCGGGTTGCTCAACCCGCGTGCGTTCGATTATGACGCCTGGTTACTGGCCCAACGCATCGGCGCCACCGGG
ACCGTCAAGGACGGCCAGAGGCTAAGGGAGGCGCAATGGGCCTGGCGCGATGGCATCCGTCAGCGCTTGCAAGCAGTGGA
TGCCCAAGGGCGAACGGGGGCGCTGACGGCGTTGGTGCTGGGGGATGGCGCCGGGCTGAGCCGCGAAGACTGGCAGGTGT
TGCAAGACACCGGCACCGTGCATCTGCTGGTGATTTCCGGGCAACACATTGGTTTGCTGGCAGGGTTGGTGTATCTGCTG
ATCGCCGGGCTGGCTCGTTATGGTGCGTGGCCCAAGGGCTTGCCGTGGCTGCCATGGGCGTGCGGGCTGGCGTTCGTGGC
GGCGCTCGGTTATGGGCTGCTGGCCGGCTTCGAGGTGCCGGTGCGTCGGGCCTGCCTGATGATCGGTCTGGTGCTGTTGT
GGCGGCTACGGTTTCGTCACCTCGGCGCATGGTGGCCGCTGTTGCTGGCGCTTGACGGCGTTTTGCTGCTGGAGCCGCTG
GCGAGCCTGCAACCGGGTTTCTGGTTGTCCTTCGCGGCAGTAGCGGTACTGATCTTCACCTTTGGCGGACGATTGGGGCC
GTGGCGTTGGTGGCAAACCTGGACCCGCGCCCAATGGCTGATCGCGATCGGTCTGGGCCCGCTGCTGTTGGTGCTGGGGT
TGCCGATCAGTCTCAGCGGGCCGCTGACGAACCTGTTGGCGGTGCCCTGGATCAGTCTGGTGGTGTTGCCGCCGGCCTTG
CTCGGAACGCTGTTGTTGCCTGTTCCTTATGTGGGCGAAGGGTTGCTGTGGTTGGCCGGCGGTCTGATCGACCTTCTGTT
CAGAGGGTTGGTGTTGGTGGCTGGGCAATTACCGGCGTGGGTGCCGGCGGCGGTCCCGTTGTGGGTATGGGCGCTCGGCA
CGCTGGGGGCGTTTCTTCTGTTGCTGCCCAGAGGCGTGCCGTTGCGCCCGTTGGGTTGGCCGATGCTGCTGTTGCTGGTT
TTTCCGCCCCGGCACACGTTGCCTGAAGGCATGGCCGAGGTCTGGCAGCTGGATGTCGGCCAGGGATTGGCCATCCTGGT
GCGTACTCGCGATCACACCCTGCTGTATGACGCCGGGCCACGGTTCGGCGATATCGACCTGGGGGAGCGGGTGGTGTTGC
CATCATTGCGCAAACTGGGCGTGGACGGCCTAGATCTGATGCTGATCAGCCATGCCGATGCCGATCATGCCGGCGGTGCG
CGAGCGATTGCCAACGCAATACCAGTGAAGCAAGTACTGAGTGGCGATCACCTGGCCCTGCCAGACGAACTGCACGCCGA
GGGCTGCGAGAGCGGTCAGCAATGGGCCTGGGACGGCGTGAAGTTCCAACTCTGGCAGTGGCCGTCAGCCAGCGAGAGTA
ATCAGAAATCCTGCGTGCTGCAGATCGAAGCCAACGGCGAACGGCTGCTGCTGACCGGCGATATTGATAGCGCGGCCGAG
CGGGCGCTGCTCGACAGTCCAATGGCGGTGCCGACGGATTGGTTGCAGGCACCGCACCATGGCAGTCGCAGTTCGTCGTC
GACGGCATTGCTCAGCGCCTTGCAACCCAAAGCGGTGCTGATTTCCCGTGGCAACGGCAATTCTTTCGGCCATCCCCATC
CCACGGTCGTGGCGCGGTATCAAAAGCGCGGTGTGGCGATCTACGACAGCGCTGTGCAGGGTGCCATTCGTCTACAACTG
GGACGCTTCGCACCGCCGTGGACGATGCTTCAGGAACGGCGTTTCTGGCGCGATCCGCCACCATTGAGCCAGTAA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (198-464)

• Domain of unknown function (DUF4131) (DUF4131) (22-167)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-681)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	63.561	96.64	0.614
comA	Ralstonia pseudosolanacearum GMI1000	32.927	100	0.363