Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LOY38_RS08360 Genome accession   NZ_CP087196
Coordinates   1840498..1841133 (+) Length   211 a.a.
NCBI ID   WP_258699601.1    Uniprot ID   -
Organism   Pseudomonas sp. B21-015     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1835498..1846133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY38_RS08340 (LOY38_08335) - 1835634..1836566 (+) 933 WP_095634883.1 ABC transporter ATP-binding protein -
  LOY38_RS08345 (LOY38_08340) - 1836563..1837342 (+) 780 WP_258699598.1 ABC transporter permease -
  LOY38_RS08350 (LOY38_08345) - 1837514..1838029 (-) 516 WP_258699599.1 DUF2062 domain-containing protein -
  LOY38_RS08355 (LOY38_08350) comA 1838166..1840400 (+) 2235 WP_258699600.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LOY38_RS08360 (LOY38_08355) exbB 1840498..1841133 (+) 636 WP_258699601.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LOY38_RS08365 (LOY38_08360) - 1841130..1841558 (+) 429 WP_258699602.1 biopolymer transporter ExbD -
  LOY38_RS08370 (LOY38_08365) lpxK 1841558..1842568 (+) 1011 WP_258699603.1 tetraacyldisaccharide 4'-kinase -
  LOY38_RS08375 (LOY38_08370) - 1842594..1842779 (+) 186 WP_007945752.1 Trm112 family protein -
  LOY38_RS08380 (LOY38_08375) kdsB 1842776..1843540 (+) 765 WP_258699604.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LOY38_RS08385 (LOY38_08380) - 1843540..1844004 (+) 465 WP_258699605.1 low molecular weight protein-tyrosine-phosphatase -
  LOY38_RS08390 (LOY38_08385) murB 1844001..1845020 (+) 1020 WP_258699606.1 UDP-N-acetylmuramate dehydrogenase -
  LOY38_RS08395 (LOY38_08390) - 1845266..1845736 (+) 471 WP_007941956.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22911.10 Da        Isoelectric Point: 6.8768

>NTDB_id=627879 LOY38_RS08360 WP_258699601.1 1840498..1841133(+) (exbB) [Pseudomonas sp. B21-015]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKDKLKELRANSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFMGTGMGTNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=627879 LOY38_RS08360 WP_258699601.1 1840498..1841133(+) (exbB) [Pseudomonas sp. B21-015]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCGGCCATGGCGATCGTCGC
CGAGCGTCTGTGGACCCTGCGTGCCAGCCGCGTGACCCCGGAGCACTTGCTCGGGCAGGTGTGGGTCTGGATCAAAGACA
AGCAACTCAATAAAGACAAACTCAAGGAACTGCGCGCCAACTCCCCGCTGGGCGAGATCCTGGCCGCCGGTCTGGCGAAT
TCCAGGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCTGCGCGAGTGATCCATGAACTCGAACGCTACAT
CAATGCCCTCGGCACCATTGCCGCCATGGCCCCGTTGCTGGGTTTGCTGGGTACGGTACTGGGCATGATCGATATTTTCA
GTGCGTTCATGGGCACGGGCATGGGCACTAACGCCGCGGTTCTGGCCGGTGGTATTTCCAAAGCGCTGATCACCACCGCT
GCTGGCCTGATGGTCGGCATCCCGGCCGTGTTCTTCCACCGCTTCCTGCAACGCCGGATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAACTGGTCGAGGTAGTGCAGGGCGACCGCGACGTGGATCTGGCCGAGGGTAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.308

100

0.853