Detailed information NTG0627872

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: LOY38_RS04600
• Genome accession: NZ_CP087196
• Coordinates: 998182..999528 (-)
• Length: 448 a.a.
• NCBI ID: WP_258699016.1
• Uniprot ID: -
• Organism: Pseudomonas sp. B21-015
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 993182..1004528

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LOY38_RS04585 (LOY38_04580)	-	993366..996481 (+)	3116	Protein_901	pilus assembly protein	-
LOY38_RS04590 (LOY38_04585)	-	996495..996896 (+)	402	WP_258699014.1	type IV pilin protein	-
LOY38_RS04595 (LOY38_04590)	thiO	996953..998053 (+)	1101	WP_258699015.1	glycine oxidase ThiO	-
LOY38_RS04600 (LOY38_04595)	pilR	998182..999528 (-)	1347	WP_258699016.1	sigma-54 dependent transcriptional regulator	Regulator
LOY38_RS04605 (LOY38_04600)	pilS	999525..1001114 (-)	1590	WP_258700653.1	PAS domain-containing sensor histidine kinase	Regulator
LOY38_RS04610 (LOY38_04605)	-	1001104..1001337 (-)	234	WP_258699017.1	PP0621 family protein	-
LOY38_RS04615 (LOY38_04610)	-	1001474..1002490 (-)	1017	WP_258699018.1	outer membrane protein assembly factor BamD	-
LOY38_RS04620 (LOY38_04615)	rluD	1002642..1003604 (+)	963	WP_007901932.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
LOY38_RS04625 (LOY38_04620)	pgeF	1003601..1004326 (+)	726	WP_258699019.1	peptidoglycan editing factor PgeF	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 49911.40 Da
• Isoelectric Point: 7.4034

>NTDB_id=627872 LOY38_RS04600 WP_258699016.1 998182..999528(-) (pilR) [Pseudomonas sp. B21-015]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLDTFSARNLAEAQALLARETFDLCLTDMRLPDGTGLALVQHIQQRYAQVP
VAMITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVTSALRLPAPGGACTAIDRRLLGDSLPMRSLRKQIDKLARSQA
PVYISGESGSGKELVARLIHDQGPRAARPFVPVNCGAIPSELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRSIGGQQETVVDVRILCATHKDLGAEVTAERFRQDLYYRLNVIELRVPPLRERRDDIELLA
SHVLRRLATGTGQPAAKLHPQALDALKSYRFPGNVRELENMLERAHTLCENKQIEASDLRLTEGNCNPDGDVPDLTQIDN
LEAYLENVERKLILQALEETRWNRTAAAQRLNLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1347 bp

>NTDB_id=627872 LOY38_RS04600 WP_258699016.1 998182..999528(-) (pilR) [Pseudomonas sp. B21-015]
TTGAACACGAGCCCACGGCAAAAAATCCTGATCGTCGACGATGAACCCGATATCCGCGAACTCCTGGAAATCACCCTGGG
ACGGATGAAACTCGACACCTTCAGCGCACGCAACCTCGCGGAAGCACAGGCGCTGCTGGCACGGGAGACGTTTGATCTGT
GCCTCACCGACATGCGCCTGCCAGACGGCACAGGCCTGGCGCTGGTGCAGCACATCCAGCAGCGTTATGCGCAAGTGCCG
GTGGCAATGATCACCGCCTACGGCAGCCTGGAGACGGCAATCAACGCTCTCAAGGCGGGCGCCTTCGACTTTCTGACCAA
ACCGGTCGACCTCACCCGCCTGCGCGAACTGGTCACCAGCGCCCTGCGCTTGCCCGCGCCGGGCGGCGCCTGCACCGCCA
TCGATCGGCGCCTGCTGGGCGACTCGTTGCCCATGCGCAGTCTGCGCAAACAAATCGACAAACTGGCCCGCAGCCAGGCC
CCGGTGTACATCAGCGGCGAGTCCGGCAGCGGCAAGGAGTTGGTCGCCCGCCTGATCCATGACCAAGGCCCACGTGCCGC
CCGACCGTTCGTCCCGGTGAACTGTGGAGCGATCCCGTCGGAGTTGATGGAAAGCGAATTTTTCGGCCATCGCAAAGGCA
GTTTCAGCGGCGCCATCGAAGACAAACCCGGACTGTTCCAGGCCGCTCATGGCGGCACATTGTTCCTCGACGAAGTGGCT
GACCTGCCGCTGGCGATGCAGGTCAAACTGCTGCGGGCGATTCAGGAGAAAGCCGTTCGCAGCATCGGTGGGCAGCAAGA
AACCGTGGTCGATGTGCGCATCCTCTGCGCCACCCACAAAGACCTCGGTGCCGAGGTCACCGCCGAACGCTTTCGCCAGG
ATTTGTACTACCGACTCAATGTGATCGAGCTTCGGGTGCCGCCCTTGCGCGAACGCCGCGACGACATTGAGCTCCTGGCC
AGCCATGTACTCAGACGATTGGCGACCGGCACCGGCCAACCCGCCGCAAAACTCCACCCGCAAGCTCTCGATGCACTGAA
AAGCTATCGTTTTCCAGGAAACGTGCGGGAATTGGAGAACATGCTTGAGCGGGCCCACACCTTGTGCGAGAACAAACAGA
TCGAAGCCAGCGACCTGCGACTGACCGAAGGCAACTGCAACCCGGACGGCGACGTGCCGGACCTGACACAAATCGACAAC
CTGGAAGCCTATCTGGAAAATGTCGAACGCAAACTGATCCTCCAGGCTCTCGAGGAAACCCGCTGGAATCGCACAGCGGC
GGCTCAGCGGTTGAATTTGTCGTTTCGATCGATGCGTTACAGGCTCAAAAAATTGGGTTTGGATTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (9-118)

• Sigma-54 interaction domain (Sigma54_activat) (139-304)

• Bacterial regulatory protein, Fis family (HTH_8) (405-445)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	79.007	98.884	0.781
pilR	Acinetobacter baumannii strain A118	49.02	100	0.502