Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   LOY38_RS04605 Genome accession   NZ_CP087196
Coordinates   999525..1001114 (-) Length   529 a.a.
NCBI ID   WP_258700653.1    Uniprot ID   -
Organism   Pseudomonas sp. B21-015     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 994525..1006114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY38_RS04590 (LOY38_04585) - 996495..996896 (+) 402 WP_258699014.1 type IV pilin protein -
  LOY38_RS04595 (LOY38_04590) thiO 996953..998053 (+) 1101 WP_258699015.1 glycine oxidase ThiO -
  LOY38_RS04600 (LOY38_04595) pilR 998182..999528 (-) 1347 WP_258699016.1 sigma-54 dependent transcriptional regulator Regulator
  LOY38_RS04605 (LOY38_04600) pilS 999525..1001114 (-) 1590 WP_258700653.1 PAS domain-containing sensor histidine kinase Regulator
  LOY38_RS04610 (LOY38_04605) - 1001104..1001337 (-) 234 WP_258699017.1 PP0621 family protein -
  LOY38_RS04615 (LOY38_04610) - 1001474..1002490 (-) 1017 WP_258699018.1 outer membrane protein assembly factor BamD -
  LOY38_RS04620 (LOY38_04615) rluD 1002642..1003604 (+) 963 WP_007901932.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LOY38_RS04625 (LOY38_04620) pgeF 1003601..1004326 (+) 726 WP_258699019.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58695.61 Da        Isoelectric Point: 7.1686

>NTDB_id=627873 LOY38_RS04605 WP_258700653.1 999525..1001114(-) (pilS) [Pseudomonas sp. B21-015]
MVAETPSPGNKQAQRLLRLYHLYRLSIGITLVLLISSNMDNQLLKFANDDLLRNGSWLYLVLNILLVVFLGNTRRPSQLL
SLALVDVLLLCGLFYAAGGVASAIGNLLIVSVAISNTLLRGRIGLLIAAVGALGIVGLSFILSFSHSTNPSDYLQIGTLG
ALCFAAALLVQGLIRRLEVSETLAEQRASEVLGLEALNALILQRMRTGILVLDDQRRVQLANHSALTLLGQEKLDGQLID
DYSKPLVERLQLWFNNPTLRPQSLKIASNGLELQPSFIALNQSPHHQTLVFLEDLAQIAQQAQQLKLAALGRLTAVIAHE
IRNPLGAISHAAQLLEESEELNGADRRLTQIIQDHSQRMNRVIENVLQLSRRQQTMPQRLDLKPWLEHFVAETREGATER
QQIHLRIGSGEFKTLMDPNQLTQVLDNLLRNAWRHSALQHDQAQAWLELFIDPDSQLPTLEVLDDGPGVASDQRAHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKPRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=627873 LOY38_RS04605 WP_258700653.1 999525..1001114(-) (pilS) [Pseudomonas sp. B21-015]
GTGGTCGCTGAGACGCCCAGTCCCGGCAACAAACAGGCCCAGCGATTGCTGCGCCTCTATCACCTCTACCGCTTAAGCAT
CGGCATCACCCTGGTGCTGTTGATCTCCAGCAACATGGACAACCAGTTGCTGAAGTTCGCCAATGACGACCTGCTGCGCA
ATGGCAGCTGGTTGTATCTGGTACTGAATATCCTGCTGGTGGTCTTTCTGGGGAACACCCGGCGTCCCTCGCAGCTGCTC
AGCCTGGCGCTGGTCGATGTCCTGCTGCTGTGCGGCCTGTTCTACGCCGCAGGCGGCGTGGCCAGCGCCATCGGCAATTT
GCTGATCGTGTCGGTGGCCATCAGCAATACCCTGCTGCGCGGGCGTATCGGCCTGCTGATCGCAGCGGTCGGCGCCCTCG
GCATCGTCGGTTTGAGCTTCATCCTGAGCTTCAGCCACTCCACCAACCCCAGCGATTACCTGCAAATAGGCACCCTCGGC
GCCCTGTGTTTTGCTGCGGCGTTGCTGGTGCAAGGCTTGATCCGACGACTGGAAGTCAGCGAAACCCTGGCGGAGCAGCG
GGCCAGCGAAGTACTCGGCCTCGAAGCGCTCAACGCACTGATCCTGCAACGCATGCGCACAGGCATTCTGGTGCTCGACG
ACCAACGGCGGGTGCAACTGGCCAATCACAGTGCCTTGACCTTGCTCGGGCAGGAAAAGCTGGATGGCCAGTTGATCGAC
GATTATTCGAAGCCGTTGGTCGAGCGCCTCCAACTGTGGTTCAACAATCCGACTTTGCGCCCGCAAAGCCTGAAAATCGC
CAGTAATGGCCTGGAGCTGCAACCAAGCTTCATTGCCCTGAACCAAAGCCCGCACCACCAGACGCTGGTCTTTCTCGAAG
ACCTCGCCCAAATCGCCCAACAGGCCCAACAACTGAAACTCGCCGCCCTCGGTCGCCTGACCGCCGTTATTGCCCATGAG
ATCCGCAATCCACTGGGCGCCATTAGTCATGCCGCGCAGTTACTGGAGGAATCCGAGGAACTGAACGGCGCGGATCGGCG
TCTGACACAGATTATTCAAGACCACTCTCAGCGAATGAATCGGGTAATCGAAAACGTCCTGCAACTGTCCCGTCGCCAGC
AAACCATGCCACAACGGCTTGATTTGAAGCCGTGGCTGGAGCACTTCGTCGCCGAAACCCGCGAAGGGGCGACCGAGCGT
CAGCAGATTCACCTGCGCATCGGTTCGGGAGAATTCAAAACCCTGATGGATCCGAATCAGCTGACCCAGGTTCTCGACAA
TCTATTGCGCAACGCCTGGCGCCATAGCGCCCTGCAGCACGATCAGGCACAGGCCTGGCTCGAGTTGTTTATCGACCCGG
ACAGCCAGTTGCCGACCCTTGAAGTCCTGGACGATGGCCCCGGCGTGGCGTCGGACCAGCGTGCACATTTGTTCGAACCG
TTCTTTACCACCAGCAGCCAGGGCACCGGCCTGGGGCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAATCAGGCCCGCCT
AGACTTCAAACCACGCCAAGGCGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60.189

100

0.603