Detailed information NTG0627855

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: LOY47_RS25850
• Genome accession: NZ_CP087195
• Coordinates: 5820499..5821845 (+)
• Length: 448 a.a.
• NCBI ID: WP_053163367.1
• Uniprot ID: -
• Organism: Pseudomonas brassicacearum strain B21-016
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5815499..5826845

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LOY47_RS25825 (LOY47_25795)	pgeF	5815713..5816438 (-)	726	WP_003205694.1	peptidoglycan editing factor PgeF	-
LOY47_RS25830 (LOY47_25800)	rluD	5816435..5817397 (-)	963	WP_003205696.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
LOY47_RS25835 (LOY47_25805)	-	5817548..5818564 (+)	1017	WP_003205698.1	outer membrane protein assembly factor BamD	-
LOY47_RS25840 (LOY47_25810)	-	5818690..5818923 (+)	234	WP_013694237.1	PP0621 family protein	-
LOY47_RS25845 (LOY47_25815)	pilS	5818913..5820502 (+)	1590	WP_003205701.1	nitrogen regulation protein NR(II)	Regulator
LOY47_RS25850 (LOY47_25820)	pilR	5820499..5821845 (+)	1347	WP_053163367.1	sigma-54 dependent transcriptional regulator	Regulator
LOY47_RS25855 (LOY47_25825)	-	5821928..5822293 (-)	366	WP_039014157.1	DUF6124 family protein	-
LOY47_RS25860 (LOY47_25830)	-	5823583..5825013 (-)	1431	WP_039011935.1	IS1182 family transposase	-
LOY47_RS25865 (LOY47_25835)	thiO	5825319..5826419 (-)	1101	WP_003205709.1	glycine oxidase ThiO	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 50156.56 Da
• Isoelectric Point: 5.9886

>NTDB_id=627855 LOY47_RS25850 WP_053163367.1 5820499..5821845(+) (pilR) [Pseudomonas brassicacearum strain B21-016]
MNNRSRQRILIVDDEPDIRELLDITLGRMKLDTRSAKNLAEAQALLAGEAFDLCLTDMRLPDGTGLELVQHIQQRYPQLP
VAMITAYGSLETAIDALKAGAFDFLTKPVDLGRLRELVTSALRLPPVATPGTTLERSLLGNSPPMLSVRKQIEKLARSQA
PVYISGESGCGKELVARLIHEQGPRANQRFVPVNCGAIPTELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRAVGGQQEEVVDVRILCATHKDLDGEVAAGRFRQDLYYRLNVIELRVPPLRERREDIELLA
NHMLQRLAANTGSPPVRLHPQALDALKNYRFPGNVRELENMLERAYTLCEQQQIEADDLRLAEGNSTTEAGNPDLMQVDN
LEDYLEDVERKLILQALEETRWNRTAAAQRLKLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1347 bp

>NTDB_id=627855 LOY47_RS25850 WP_053163367.1 5820499..5821845(+) (pilR) [Pseudomonas brassicacearum strain B21-016]
TTGAATAATCGCTCACGGCAACGAATCCTGATCGTCGATGACGAACCGGACATCCGCGAACTCCTGGACATCACCCTGGG
CCGGATGAAACTCGACACCCGCAGCGCCAAGAACCTTGCCGAGGCCCAAGCCCTGCTGGCGGGGGAAGCCTTCGACCTGT
GCCTGACCGACATGCGCCTGCCCGATGGCACCGGCCTGGAACTGGTGCAGCACATCCAGCAACGCTACCCCCAACTGCCC
GTGGCGATGATCACCGCCTATGGCAGCCTGGAAACCGCCATCGACGCCCTCAAGGCCGGCGCCTTCGACTTCCTGACCAA
ACCGGTCGACCTGGGTCGGCTGCGAGAGCTGGTCACCAGTGCCCTGCGCCTGCCGCCGGTCGCCACGCCGGGCACGACCC
TCGAGCGCAGCCTGCTGGGTAACTCGCCACCGATGCTCAGCGTGCGCAAGCAGATCGAGAAACTCGCCCGCAGCCAGGCA
CCGGTGTACATCAGCGGGGAATCGGGCTGCGGCAAGGAACTGGTCGCCCGGCTGATCCACGAACAGGGCCCTCGTGCCAA
CCAGCGCTTCGTACCGGTCAACTGTGGGGCGATTCCCACGGAGCTGATGGAAAGCGAGTTTTTCGGCCATCGAAAAGGCA
GCTTCAGCGGCGCCATCGAGGACAAGCCCGGGCTGTTCCAGGCCGCCCATGGCGGGACCCTGTTCCTCGATGAAGTGGCC
GACTTGCCCTTGGCGATGCAGGTCAAGCTGTTGCGAGCCATCCAGGAAAAAGCCGTGCGCGCCGTTGGCGGCCAACAGGA
AGAAGTGGTGGATGTGCGCATCCTCTGCGCCACCCACAAGGATCTGGACGGCGAAGTGGCTGCCGGGCGCTTTCGCCAGG
ATTTGTATTACCGGCTGAACGTCATCGAACTGCGCGTGCCGCCGTTGCGTGAACGTCGTGAAGACATCGAGCTGCTGGCT
AACCACATGCTCCAGCGCCTGGCGGCCAACACCGGCAGTCCACCGGTCAGATTGCATCCCCAAGCGTTGGACGCTCTCAA
GAATTACCGCTTCCCGGGCAATGTGCGAGAGCTGGAGAACATGCTCGAACGTGCCTACACCCTTTGTGAACAGCAGCAGA
TCGAAGCGGATGACCTGCGCCTGGCCGAGGGCAATAGTACTACTGAGGCAGGCAATCCCGATTTGATGCAGGTCGACAAC
CTGGAGGATTACCTGGAAGACGTTGAGCGCAAGCTCATCCTCCAGGCGTTGGAGGAAACCCGCTGGAACCGCACGGCGGC
GGCGCAGCGGTTGAAGTTGTCGTTTCGGTCGATGCGGTATCGGTTGAAGAAGCTTGGGCTGGATTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (405-445)

• Sigma-54 interaction domain (Sigma54_activat) (139-304)

• Response regulator receiver domain (Response_reg) (9-118)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	78.829	99.107	0.781
pilR	Acinetobacter baumannii strain A118	50.327	100	0.516