Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   LOY47_RS25845 Genome accession   NZ_CP087195
Coordinates   5818913..5820502 (+) Length   529 a.a.
NCBI ID   WP_003205701.1    Uniprot ID   F2KLF0
Organism   Pseudomonas brassicacearum strain B21-016     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5813913..5825502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY47_RS25825 (LOY47_25795) pgeF 5815713..5816438 (-) 726 WP_003205694.1 peptidoglycan editing factor PgeF -
  LOY47_RS25830 (LOY47_25800) rluD 5816435..5817397 (-) 963 WP_003205696.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LOY47_RS25835 (LOY47_25805) - 5817548..5818564 (+) 1017 WP_003205698.1 outer membrane protein assembly factor BamD -
  LOY47_RS25840 (LOY47_25810) - 5818690..5818923 (+) 234 WP_013694237.1 PP0621 family protein -
  LOY47_RS25845 (LOY47_25815) pilS 5818913..5820502 (+) 1590 WP_003205701.1 nitrogen regulation protein NR(II) Regulator
  LOY47_RS25850 (LOY47_25820) pilR 5820499..5821845 (+) 1347 WP_053163367.1 sigma-54 dependent transcriptional regulator Regulator
  LOY47_RS25855 (LOY47_25825) - 5821928..5822293 (-) 366 WP_039014157.1 DUF6124 family protein -
  LOY47_RS25860 (LOY47_25830) - 5823583..5825013 (-) 1431 WP_039011935.1 IS1182 family transposase -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58937.74 Da        Isoelectric Point: 7.3882

>NTDB_id=627854 LOY47_RS25845 WP_003205701.1 5818913..5820502(+) (pilS) [Pseudomonas brassicacearum strain B21-016]
MSAEASSPREKQAQRLLRLYHLYRLSIGITLVLLISSKLDNRLLEFANDDLLRSGSWLYLVLNILLVVFLENTRRPARLF
GLALTDVLLLSWLFFAAGGVPSAIGNLLIVSVAIGNTLLRSRVGLLIAAVATIGIVGSTFFLGLSDSNRPSSYLQAGTLG
ALCFAAALLVQGLTRRLEASETLAEQRASEVIGLEALNALILQRMRTGILVLDRERRVQLANESALNLLGMHDLVGQRID
DYCTALVERLQLWLNNPSLRPPSLTVTGTGLTLQPSFIALGHHDQQQLLVFLEDLAQVAQQAQQLKLASLGRLTAGIAHE
IRNPLGAISHAAQLLRESEELNNADRRLTQIIQDHSQRMNRVIENVLQLSRRQQTTPQRLDLRTWLDQFVRQARESMAEH
QHLHLSIDPGDYTTLMDPDQLTQVLDNLLRNAWRHSAMTHEQAEAWLKLFIDPHSQLSTLDIIDNGPGVTPEQQAHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKPRQGGGCFRITFAHGRKQI

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=627854 LOY47_RS25845 WP_003205701.1 5818913..5820502(+) (pilS) [Pseudomonas brassicacearum strain B21-016]
GTGAGCGCTGAGGCCTCAAGCCCACGCGAAAAACAGGCGCAGCGCCTGCTGCGTCTCTATCACCTGTATCGCCTGAGCAT
CGGCATCACCCTGGTGCTGCTGATCTCCAGCAAACTGGACAACCGCCTGCTGGAGTTCGCCAATGACGACCTGCTGCGCA
GTGGCAGTTGGTTGTACCTGGTGCTGAATATCCTGCTGGTGGTGTTCCTTGAGAACACCCGCCGCCCTGCCCGGCTGTTC
GGCCTGGCCCTGACTGACGTGCTGCTGCTCTCGTGGCTGTTCTTCGCCGCGGGCGGTGTGCCCAGTGCCATCGGCAACCT
GCTCATTGTCTCGGTGGCCATCGGCAATACGCTGTTGCGAAGCCGGGTCGGCCTGTTGATTGCCGCTGTCGCCACGATCG
GTATCGTCGGGTCGACTTTTTTCCTCGGCCTCAGCGACTCAAACCGTCCCAGCAGTTATCTGCAAGCCGGCACCCTGGGG
GCACTGTGTTTTGCCGCCGCCCTGCTGGTACAGGGCCTGACCCGGCGACTGGAAGCCAGTGAAACCCTGGCCGAGCAACG
GGCCAGCGAGGTAATCGGCCTCGAAGCGCTCAACGCACTGATCCTGCAACGCATGCGCACCGGCATCCTGGTGCTCGACC
GCGAACGGCGCGTGCAATTGGCCAACGAAAGCGCCTTGAACCTGCTGGGCATGCACGACCTGGTCGGCCAGCGAATCGAT
GACTATTGCACCGCCCTGGTCGAACGCCTGCAATTGTGGCTGAACAACCCCAGCCTGCGCCCCCCCAGCCTGACCGTGAC
CGGCACAGGCCTGACCCTGCAACCGAGCTTCATCGCCTTGGGGCATCACGATCAGCAGCAGTTGCTGGTATTCCTTGAGG
ACCTGGCCCAAGTTGCCCAGCAGGCCCAGCAACTGAAACTCGCGTCCCTCGGGCGCCTCACTGCTGGCATCGCCCATGAA
ATCCGCAACCCCTTGGGCGCCATCAGCCACGCAGCGCAATTACTGCGCGAATCCGAGGAACTGAACAACGCGGATCGGCG
TCTGACGCAGATTATTCAAGATCACTCCCAACGAATGAATCGCGTCATTGAAAACGTCCTGCAGCTGTCTCGCCGCCAGC
AAACCACCCCCCAACGCCTCGACCTGCGGACCTGGCTCGATCAGTTCGTCCGGCAGGCCCGCGAAAGCATGGCCGAGCAC
CAGCACTTGCACCTGAGCATCGACCCGGGTGACTACACCACGCTGATGGACCCCGACCAGTTGACCCAGGTACTCGACAA
CCTGCTGCGCAACGCCTGGCGCCACAGCGCCATGACCCACGAACAGGCCGAGGCCTGGCTGAAACTGTTCATCGATCCCC
ACAGCCAGCTGTCCACACTGGACATCATCGACAACGGCCCCGGTGTAACACCCGAGCAGCAGGCACATTTGTTCGAACCC
TTCTTTACCACCAGCAGCCAGGGCACCGGCCTTGGGCTCTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCCCGCCT
AGACTTCAAACCACGCCAAGGCGGCGGTTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAGATTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F2KLF0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60.038

99.811

0.599