Detailed information NTG0627849

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: LOY47_RS21595
• Genome accession: NZ_CP087195
• Coordinates: 4911111..4913357 (-)
• Length: 748 a.a.
• NCBI ID: WP_258636068.1
• Uniprot ID: -
• Organism: Pseudomonas brassicacearum strain B21-016
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4906111..4918357

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LOY47_RS21560 (LOY47_21545)	murB	4906494..4907513 (-)	1020	WP_003204282.1	UDP-N-acetylmuramate dehydrogenase	-
LOY47_RS21565 (LOY47_21550)	-	4907510..4907974 (-)	465	WP_013694001.1	low molecular weight protein-tyrosine-phosphatase	-
LOY47_RS21570 (LOY47_21555)	kdsB	4907974..4908738 (-)	765	WP_003204286.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
LOY47_RS21575 (LOY47_21560)	-	4908735..4908920 (-)	186	WP_003179363.1	Trm112 family protein	-
LOY47_RS21580 (LOY47_21565)	lpxK	4908944..4909954 (-)	1011	WP_027911497.1	tetraacyldisaccharide 4'-kinase	-
LOY47_RS21585 (LOY47_21570)	-	4909954..4910382 (-)	429	WP_013694002.1	biopolymer transporter ExbD	-
LOY47_RS21590 (LOY47_21575)	exbB	4910379..4911014 (-)	636	WP_003204294.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
LOY47_RS21595 (LOY47_21580)	comA	4911111..4913357 (-)	2247	WP_258636068.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
LOY47_RS21600 (LOY47_21585)	-	4913502..4914017 (+)	516	WP_003204298.1	DUF2062 domain-containing protein	-
LOY47_RS21605 (LOY47_21590)	-	4914103..4914882 (-)	780	WP_003204300.1	ABC transporter permease	-
LOY47_RS21610 (LOY47_21595)	-	4914885..4915817 (-)	933	WP_003204301.1	ABC transporter ATP-binding protein	-
LOY47_RS21615 (LOY47_21600)	-	4915954..4916577 (-)	624	WP_003204303.1	glutathione S-transferase family protein	-
LOY47_RS21620 (LOY47_21605)	-	4916623..4917282 (-)	660	WP_028237404.1	transglutaminase family protein	-

Sequence

Protein

• Length: 748 a.a.
• Molecular weight: 81008.36 Da
• Isoelectric Point: 9.8155

>NTDB_id=627849 LOY47_RS21595 WP_258636068.1 4911111..4913357(-) (comA) [Pseudomonas brassicacearum strain B21-016]
MRTGLVALALGLLAPIFLPALPPIWLITAMPVLALMVLPFRTYPLGFFLFGLAWACLSAQCALDDRLPIALDGETRWVEG
RVIGLPQQGEGVMRFELADVHSRRTRLPTAMRLAWFGGPSVNSGERWRLAVKLKRPSGLLNPHGFDYAAWLLSRGIGATG
TIKDGHLLQAARGAWRDEVRQALAQVDAHGRSGALAALVLGDGGGLSREDWQVLQDTGTVHLLVISGQHIGLLAGLVYLL
VAGAARYGLWPVGLAWLPWACGLAFCAALGYGLLAGFEVPVRRACAMIGLVLLWRLRFKQPDPWWAWLLAFVGVLVFDPL
ASLRPGFWLSFAAVAILMFTFGARLGPWRWWQTWTRAQWLVALGLCPLLLIVGLPVSLSGPLVNLLAVPWISLLVLPLAL
LGTALLPVPLMGEGLLWIAGGLLDLLFKGLALVAGRMPAWVPAAVPPWALGIAAFGAFLLLLPKGVPLRVLGWPMVLLMV
FPPQEHLPQGRAEIWQLDVGQGLAVLVRTRRHALLYDAGPRFGEADAGERVVLPTLRKLGVRRLDLMLLSHADADHAGGA
RAVRNGLPTLEVISGDPDALPAELLAGPCDSGRRWEWDGVGFELWRWASAVESNQKSCVLVVEAGGERLLLTGDIDTPAE
RALLDEALAVPIQWLAAPHHGSRSSSSMALLSRLKPHSVLISRGQGNAFGHPHPQVMARYRRSGLAIYDSAEQGAIRLLL
GAFGVPRTEAGHRRYWRDPPAVGPPGQY

Nucleotide

• Length: 2247 bp

>NTDB_id=627849 LOY47_RS21595 WP_258636068.1 4911111..4913357(-) (comA) [Pseudomonas brassicacearum strain B21-016]
ATGCGCACAGGGTTAGTCGCGCTTGCACTGGGGCTGTTGGCCCCGATTTTTTTGCCGGCACTGCCGCCGATATGGCTGAT
TACAGCCATGCCGGTGCTGGCGCTGATGGTGTTGCCGTTTCGAACCTACCCGCTGGGTTTTTTCCTGTTCGGGCTGGCCT
GGGCCTGCCTGTCGGCGCAGTGTGCGCTGGATGACCGGTTACCCATCGCGCTCGACGGCGAAACCCGCTGGGTCGAGGGT
CGAGTGATCGGTTTGCCGCAACAGGGCGAAGGCGTGATGCGCTTCGAACTGGCCGATGTCCATTCACGCCGTACCCGTCT
ACCGACGGCAATGCGTCTCGCCTGGTTCGGTGGTCCGTCGGTCAACAGCGGCGAACGATGGCGATTGGCGGTGAAACTCA
AGCGGCCCAGTGGGCTGCTGAACCCGCACGGCTTCGACTATGCCGCCTGGTTGCTGAGCCGCGGCATCGGCGCGACCGGT
ACCATCAAGGATGGCCATCTCCTGCAAGCGGCCCGGGGGGCCTGGCGTGACGAGGTGCGCCAGGCGCTGGCACAGGTCGA
TGCCCACGGCCGCTCCGGTGCGCTGGCGGCTCTGGTGCTGGGCGACGGCGGCGGGCTGAGTCGCGAGGATTGGCAGGTGC
TGCAAGACACCGGCACCGTCCACTTGCTGGTGATCTCCGGGCAACACATCGGCCTGCTCGCCGGCCTGGTGTACCTGTTG
GTGGCCGGCGCGGCGCGTTATGGTCTTTGGCCGGTGGGTCTGGCCTGGTTGCCTTGGGCCTGTGGGCTGGCCTTCTGTGC
CGCCCTGGGCTACGGCTTGCTCGCCGGCTTCGAGGTGCCGGTGCGGCGGGCCTGCGCGATGATCGGCCTGGTGCTGCTGT
GGCGCTTGCGTTTCAAACAGCCAGATCCGTGGTGGGCATGGCTGCTGGCCTTCGTCGGGGTGCTGGTGTTCGACCCGCTT
GCCAGCTTGCGGCCGGGGTTCTGGTTGTCGTTTGCGGCCGTGGCCATATTGATGTTCACCTTTGGCGCTCGCCTGGGACC
CTGGCGCTGGTGGCAAACCTGGACCCGTGCCCAGTGGCTGGTCGCGCTCGGCCTGTGTCCGTTGTTGTTGATCGTGGGTT
TGCCGGTCAGCCTCAGCGGGCCGTTGGTGAACCTGCTCGCGGTGCCCTGGATCAGCCTGTTGGTATTGCCGCTGGCGCTG
CTTGGCACGGCATTGTTGCCGGTGCCGCTCATGGGCGAAGGCCTGCTGTGGATTGCCGGTGGGCTGCTCGATCTGCTGTT
CAAGGGGCTGGCACTGGTTGCCGGACGAATGCCGGCCTGGGTTCCTGCCGCAGTCCCGCCCTGGGCCTTGGGCATCGCCG
CCTTCGGTGCTTTTTTGCTGCTGTTGCCCAAAGGTGTGCCGCTACGTGTACTGGGGTGGCCGATGGTGTTGCTGATGGTT
TTTCCACCGCAAGAACACCTGCCGCAAGGGCGCGCCGAGATCTGGCAACTGGACGTGGGCCAAGGGCTGGCGGTGCTGGT
GCGGACCCGGCGGCACGCCCTGCTTTACGACGCCGGGCCGCGCTTTGGCGAGGCTGACGCGGGCGAGCGGGTCGTCCTGC
CGACCTTGCGCAAACTGGGTGTGCGCCGCTTGGACCTGATGTTGCTCAGCCATGCCGACGCCGATCACGCTGGCGGTGCC
CGCGCCGTGCGCAATGGGCTGCCGACGCTGGAAGTGATCAGCGGCGATCCGGACGCGCTGCCCGCCGAACTGCTGGCCGG
GCCTTGCGACAGTGGCAGGCGCTGGGAATGGGATGGGGTCGGGTTCGAACTGTGGCGGTGGGCCTCTGCCGTCGAGAGCA
ACCAGAAGTCCTGTGTCTTGGTGGTGGAGGCGGGCGGTGAACGCCTGCTGCTGACTGGCGATATCGACACCCCTGCCGAG
CGCGCCTTGCTCGACGAGGCCCTGGCCGTGCCGATCCAGTGGCTGGCCGCGCCGCATCACGGCAGTCGCAGTTCGTCGTC
GATGGCGTTGCTGTCGCGTCTCAAGCCGCATTCGGTATTGATCTCCCGAGGGCAGGGCAATGCGTTCGGCCACCCTCATC
CCCAGGTGATGGCCCGGTATCGGCGCTCGGGCCTGGCGATCTACGACAGTGCCGAGCAGGGCGCCATTCGTCTGCTACTG
GGGGCTTTCGGGGTGCCGCGCACCGAGGCCGGGCACCGCCGTTATTGGCGTGATCCGCCAGCCGTCGGGCCACCGGGGCA
ATATTGA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (198-464)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-676)

• Domain of unknown function (DUF4131) (DUF4131) (23-165)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	61.872	95.722	0.592
comA	Ralstonia pseudosolanacearum GMI1000	32.038	100	0.364