Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LOY47_RS21590 Genome accession   NZ_CP087195
Coordinates   4910379..4911014 (-) Length   211 a.a.
NCBI ID   WP_003204294.1    Uniprot ID   -
Organism   Pseudomonas brassicacearum strain B21-016     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4905379..4916014
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY47_RS21555 (LOY47_21540) - 4905758..4906228 (-) 471 WP_003204280.1 (2Fe-2S)-binding protein -
  LOY47_RS21560 (LOY47_21545) murB 4906494..4907513 (-) 1020 WP_003204282.1 UDP-N-acetylmuramate dehydrogenase -
  LOY47_RS21565 (LOY47_21550) - 4907510..4907974 (-) 465 WP_013694001.1 low molecular weight protein-tyrosine-phosphatase -
  LOY47_RS21570 (LOY47_21555) kdsB 4907974..4908738 (-) 765 WP_003204286.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LOY47_RS21575 (LOY47_21560) - 4908735..4908920 (-) 186 WP_003179363.1 Trm112 family protein -
  LOY47_RS21580 (LOY47_21565) lpxK 4908944..4909954 (-) 1011 WP_027911497.1 tetraacyldisaccharide 4'-kinase -
  LOY47_RS21585 (LOY47_21570) - 4909954..4910382 (-) 429 WP_013694002.1 biopolymer transporter ExbD -
  LOY47_RS21590 (LOY47_21575) exbB 4910379..4911014 (-) 636 WP_003204294.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LOY47_RS21595 (LOY47_21580) comA 4911111..4913357 (-) 2247 WP_258636068.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LOY47_RS21600 (LOY47_21585) - 4913502..4914017 (+) 516 WP_003204298.1 DUF2062 domain-containing protein -
  LOY47_RS21605 (LOY47_21590) - 4914103..4914882 (-) 780 WP_003204300.1 ABC transporter permease -
  LOY47_RS21610 (LOY47_21595) - 4914885..4915817 (-) 933 WP_003204301.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22842.95 Da        Isoelectric Point: 8.0840

>NTDB_id=627848 LOY47_RS21590 WP_003204294.1 4910379..4911014(-) (exbB) [Pseudomonas brassicacearum strain B21-016]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKDKLKELRASSPLGEVLAAGLAN
SKHGREIMKECIEEAAARVIHELERYINTLGTIAAMSPLLGLLGTVLGMIDIFSAFTGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAGGKK

Nucleotide


Download         Length: 636 bp        

>NTDB_id=627848 LOY47_RS21590 WP_003204294.1 4910379..4911014(-) (exbB) [Pseudomonas brassicacearum strain B21-016]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCACTGGGTATCGTTGC
CGAACGCCTGTGGACCCTGCGGGCCAGCCGCGTGACCCCGGAGCATCTGCTCGGGCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTGAACAAGGACAAGCTCAAGGAGCTGCGAGCCAGTTCGCCCCTGGGGGAAGTCCTCGCCGCCGGCCTGGCGAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATCGAGGAAGCCGCCGCCCGGGTCATCCATGAACTGGAGCGCTACAT
CAATACCCTGGGCACCATCGCCGCCATGTCCCCGCTGCTGGGCCTGCTGGGTACGGTGCTGGGCATGATCGACATCTTCA
GTGCGTTCACCGGTTCCGGCATGACCACTAACGCTGCGGTGCTGGCGGGGGGGATCTCCAAGGCTTTGATCACCACCGCT
GCTGGCCTGATGGTCGGTATCCCTTCGGTGTTCTTCCACAGGTTCCTGCAACGCCGCGTCGACGAGTTGGTGGTGGGCAT
GGAGCAGGAAGCCATCAAGCTGGTCGAGGTGGTGCAGGGGGACCGTGACGTGGACCTGGCTGGGGGCAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.762

99.526

0.844