Detailed information NTG0627826

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: LOY28_RS25465
• Genome accession: NZ_CP087194
• Coordinates: 5606136..5607482 (+)
• Length: 448 a.a.
• NCBI ID: WP_064620439.1
• Uniprot ID: -
• Organism: Pseudomonas sp. B21-017
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5601136..5612482

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LOY28_RS25440 (LOY28_25405)	pgeF	5601341..5602063 (-)	723	WP_111454246.1	peptidoglycan editing factor PgeF	-
LOY28_RS25445 (LOY28_25410)	rluD	5602060..5603022 (-)	963	WP_007901932.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
LOY28_RS25450 (LOY28_25415)	-	5603174..5604190 (+)	1017	WP_064620430.1	outer membrane protein assembly factor BamD	-
LOY28_RS25455 (LOY28_25420)	-	5604327..5604560 (+)	234	WP_007938406.1	PP0621 family protein	-
LOY28_RS25460 (LOY28_25425)	pilS	5604550..5606139 (+)	1590	WP_064620435.1	PAS domain-containing sensor histidine kinase	Regulator
LOY28_RS25465 (LOY28_25430)	pilR	5606136..5607482 (+)	1347	WP_064620439.1	sigma-54 dependent transcriptional regulator	Regulator
LOY28_RS25470 (LOY28_25435)	thiO	5607502..5608602 (-)	1101	WP_258612696.1	glycine oxidase ThiO	-
LOY28_RS25475 (LOY28_25440)	-	5608659..5609060 (-)	402	WP_018925895.1	type IV pilin protein	-
LOY28_RS25480 (LOY28_25445)	-	5609074..5612196 (-)	3123	WP_258612697.1	pilus assembly protein	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 49805.18 Da
• Isoelectric Point: 7.0296

>NTDB_id=627826 LOY28_RS25465 WP_064620439.1 5606136..5607482(+) (pilR) [Pseudomonas sp. B21-017]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLDTSSARNLAEAQALLARDTFDLCLTDMRLPDGTGLALVQHIQQRYAQVP
VAMITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVISALSLPAPGGTSSGIDRRLLGDSLPMRNLRKQIDKLARSQA
PVYISGESGSGKELVARLIHDQGPRASRPFVPVNCGAIPSELMESEFFGHRKGSFSGAIEDKPGLFQAAQGGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRSIGGQQETVVDVRILCATHKDLDAEVAAERFRQDLYYRLNVIELRVPSLRERRDDIELLA
NNMLKRLAASTGQPPAKLHPQALEALKNYRFPGNVRELENMLERAHTLCENKQIEASDLRLAEGNCNPDGGVPDLTQIDN
LEAYLENVERKLILQALEETRWNRTAAAQRLNLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1347 bp

>NTDB_id=627826 LOY28_RS25465 WP_064620439.1 5606136..5607482(+) (pilR) [Pseudomonas sp. B21-017]
TTGAACACGAGCCCACGGCAAAAAATCCTCATCGTCGACGACGAGCCGGATATCCGCGAACTCCTGGAAATCACCCTGGG
ACGGATGAAACTCGACACCTCCAGCGCACGCAACCTCGCAGAAGCGCAGGCGCTACTGGCACGGGATACGTTCGACCTGT
GCCTGACCGACATGCGCCTGCCTGACGGCACCGGTCTGGCGCTGGTGCAGCACATCCAGCAGCGCTATGCGCAAGTGCCG
GTGGCGATGATCACCGCCTACGGCAGCCTGGAGACAGCAATAAATGCCCTCAAGGCCGGCGCCTTCGACTTCCTGACCAA
ACCGGTCGACCTCACCCGCCTGCGCGAACTGGTCATCAGCGCCCTGAGCTTGCCAGCGCCAGGCGGCACCAGCAGCGGCA
TCGACCGTCGGCTGCTGGGCGACTCGCTGCCCATGCGCAACCTGCGCAAACAAATCGACAAACTGGCCCGCAGCCAAGCC
CCGGTCTACATCAGTGGCGAATCCGGCAGCGGCAAGGAACTGGTCGCCCGACTTATCCACGACCAAGGCCCACGCGCCAG
CCGACCGTTCGTCCCGGTGAACTGTGGGGCAATCCCGTCGGAATTGATGGAAAGCGAGTTTTTCGGCCATCGCAAAGGCA
GTTTCAGCGGCGCCATCGAAGACAAGCCCGGGCTGTTCCAGGCAGCCCAGGGCGGTACTTTGTTCCTCGACGAAGTGGCT
GACCTACCGCTGGCAATGCAGGTCAAACTGCTGCGGGCCATACAGGAGAAAGCCGTTCGCAGCATCGGTGGCCAGCAGGA
AACCGTGGTCGATGTGCGCATCCTCTGCGCCACTCACAAAGACCTCGATGCCGAAGTCGCCGCCGAACGCTTTCGCCAGG
ACTTGTACTACCGCCTGAACGTGATCGAGCTGCGAGTACCGTCCTTGCGCGAACGCCGCGACGACATTGAGCTTCTGGCC
AACAATATGCTCAAGCGACTGGCGGCCAGCACTGGCCAGCCCCCCGCAAAACTCCACCCACAAGCCCTCGAAGCGCTGAA
AAACTATCGCTTTCCTGGAAACGTGCGGGAATTGGAGAACATGCTCGAACGGGCTCACACCTTGTGCGAGAACAAACAGA
TCGAAGCCAGCGACCTGCGCCTGGCAGAAGGCAACTGCAACCCGGACGGCGGCGTGCCAGACCTGACACAGATCGATAAT
CTGGAAGCCTATCTGGAAAACGTCGAACGCAAACTCATCCTCCAGGCCCTGGAAGAAACCCGCTGGAACCGCACGGCGGC
GGCCCAGCGATTGAATCTGTCATTTCGGTCGATGCGTTACAGGCTGAAGAAATTGGGGCTGGATTGA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (139-304)

• Bacterial regulatory protein, Fis family (HTH_8) (405-445)

• Response regulator receiver domain (Response_reg) (9-118)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	79.233	98.884	0.783
pilR	Acinetobacter baumannii strain A118	48.802	100	0.5