Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   LOY28_RS25460 Genome accession   NZ_CP087194
Coordinates   5604550..5606139 (+) Length   529 a.a.
NCBI ID   WP_064620435.1    Uniprot ID   -
Organism   Pseudomonas sp. B21-017     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5599550..5611139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY28_RS25440 (LOY28_25405) pgeF 5601341..5602063 (-) 723 WP_111454246.1 peptidoglycan editing factor PgeF -
  LOY28_RS25445 (LOY28_25410) rluD 5602060..5603022 (-) 963 WP_007901932.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LOY28_RS25450 (LOY28_25415) - 5603174..5604190 (+) 1017 WP_064620430.1 outer membrane protein assembly factor BamD -
  LOY28_RS25455 (LOY28_25420) - 5604327..5604560 (+) 234 WP_007938406.1 PP0621 family protein -
  LOY28_RS25460 (LOY28_25425) pilS 5604550..5606139 (+) 1590 WP_064620435.1 PAS domain-containing sensor histidine kinase Regulator
  LOY28_RS25465 (LOY28_25430) pilR 5606136..5607482 (+) 1347 WP_064620439.1 sigma-54 dependent transcriptional regulator Regulator
  LOY28_RS25470 (LOY28_25435) thiO 5607502..5608602 (-) 1101 WP_258612696.1 glycine oxidase ThiO -
  LOY28_RS25475 (LOY28_25440) - 5608659..5609060 (-) 402 WP_018925895.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58645.59 Da        Isoelectric Point: 7.1685

>NTDB_id=627825 LOY28_RS25460 WP_064620435.1 5604550..5606139(+) (pilS) [Pseudomonas sp. B21-017]
MIAETPSPGNKQAQRLLRLYHLYRLSVGITLVLLISSNMDNQLLKFANDDLLRNGSWLYLVLNILLVVFLGNTRRPAQLF
GLALVDVLLLCGLFYAAGGMASAIGNLLIVSVAISNTLLRGRVGLLIAAVGALGIVGLSFILSFNHPASPSDYLQIGTLG
ALCFAAALLVQGLTRRLEVSETLAEQRASEVLGLEALNALILQRMRTGILVLDNQRRVQLANHSALTLLGQEKLDGQLID
DYSIPLVERLQLWLNNPTLRPQSLQIASNGLELQPSFIALDQSPHHQTLVFLEDLAQIAQQAQQLKLAALGRLTAGIAHE
IRNPLGAISHAAQLLQESEELNGADRRLTQIIQDQSQRMNRVIENVLQLSRRQQTVPQRLDLKPWLEHFVAETREGSKEH
QQIHLRIGLGDFKTLMDPDQLTQILDNLLRNAWRHSALKHDRAQAWLELFIDPDSQLPTLEVLDDGPGVAPDQRTHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKSRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=627825 LOY28_RS25460 WP_064620435.1 5604550..5606139(+) (pilS) [Pseudomonas sp. B21-017]
GTGATCGCTGAGACGCCCAGCCCAGGCAACAAACAGGCCCAGCGACTGCTGCGCCTCTATCACCTCTACCGCTTAAGCGT
CGGCATCACCCTGGTGCTGTTGATCTCCAGCAACATGGACAACCAGTTGCTGAAGTTCGCCAATGACGACCTGCTGCGCA
ACGGCAGCTGGTTGTACCTGGTGCTGAATATCCTGCTGGTGGTCTTTTTGGGGAACACCCGACGCCCCGCGCAGCTGTTC
GGCCTGGCGCTGGTCGATGTCCTGCTGCTGTGCGGCCTGTTCTATGCCGCGGGCGGCATGGCCAGTGCCATCGGCAATTT
GCTGATCGTCTCAGTAGCCATCAGCAATACCTTGCTGCGCGGGCGTGTCGGTCTGCTGATCGCAGCGGTCGGTGCCCTTG
GCATCGTGGGTTTGAGCTTCATCCTGAGCTTCAACCACCCCGCCAGCCCCAGTGATTACCTGCAAATCGGCACCCTCGGC
GCCCTGTGTTTTGCCGCGGCGCTGCTGGTGCAGGGATTGACCCGACGATTGGAGGTCAGCGAAACCCTGGCCGAACAGCG
GGCCAGTGAAGTGCTCGGTCTCGAAGCCCTCAACGCACTGATCCTGCAACGCATGCGCACAGGCATTCTGGTGCTCGACA
ACCAGCGGCGGGTGCAACTGGCCAATCACAGCGCCTTGACCTTGCTGGGGCAGGAAAAACTGGACGGCCAGTTGATCGAC
GATTACTCGATACCGTTGGTCGAGCGGCTCCAACTGTGGCTCAACAATCCAACGTTGCGCCCGCAAAGCCTGCAGATCGC
CAGCAACGGCCTCGAGCTGCAACCAAGCTTCATTGCCCTGGACCAAAGCCCGCACCACCAGACGCTGGTTTTTCTCGAAG
ACCTCGCCCAAATCGCCCAACAGGCCCAACAACTGAAACTCGCCGCCCTCGGTCGCCTGACCGCCGGGATTGCCCATGAG
ATCCGCAATCCACTGGGCGCCATTAGTCATGCCGCGCAGTTACTGCAGGAATCCGAGGAACTGAACGGTGCGGACCGGCG
TCTGACGCAGATTATTCAAGACCAATCTCAGCGCATGAATCGGGTAATCGAAAACGTCCTGCAATTGTCCCGTCGCCAGC
AAACCGTGCCGCAACGGCTCGATTTGAAGCCGTGGCTGGAGCATTTCGTCGCCGAAACCCGCGAAGGCTCGAAAGAACAT
CAGCAGATTCACCTGCGCATCGGCTTGGGAGACTTCAAAACCCTGATGGATCCGGATCAGCTGACCCAGATTCTCGATAA
CCTGTTGCGCAATGCCTGGCGCCATAGCGCCCTCAAGCATGATCGGGCGCAGGCCTGGCTTGAGTTGTTTATCGACCCGG
ACAGCCAGTTGCCGACCCTGGAAGTCCTGGACGATGGCCCTGGCGTTGCACCGGACCAACGTACTCACTTGTTCGAACCG
TTCTTCACCACCAGCAGCCAGGGTACTGGCCTGGGGCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAATCAAGCCCGCCT
AGACTTCAAATCACGCCAAGGCGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-521)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60.189

100

0.603