Detailed information NTG0627811

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: LOY28_RS07315
• Genome accession: NZ_CP087194
• Coordinates: 1659150..1661384 (+)
• Length: 744 a.a.
• NCBI ID: WP_258613279.1
• Uniprot ID: -
• Organism: Pseudomonas sp. B21-017
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1654150..1666384

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LOY28_RS07290 (LOY28_07290)	-	1655252..1655911 (+)	660	WP_192350883.1	transglutaminase family protein	-
LOY28_RS07295 (LOY28_07295)	-	1655955..1656578 (+)	624	WP_018926240.1	glutathione S-transferase family protein	-
LOY28_RS07300 (LOY28_07300)	-	1656712..1657644 (+)	933	WP_018926239.1	ABC transporter ATP-binding protein	-
LOY28_RS07305 (LOY28_07305)	-	1657641..1658420 (+)	780	WP_018926238.1	ABC transporter permease	-
LOY28_RS07310 (LOY28_07310)	-	1658492..1659013 (-)	522	WP_018926237.1	DUF2062 domain-containing protein	-
LOY28_RS07315 (LOY28_07315)	comA	1659150..1661384 (+)	2235	WP_258613279.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
LOY28_RS07320 (LOY28_07320)	exbB	1661482..1662117 (+)	636	WP_007941964.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
LOY28_RS07325 (LOY28_07325)	-	1662114..1662542 (+)	429	WP_018926235.1	biopolymer transporter ExbD	-
LOY28_RS07330 (LOY28_07330)	lpxK	1662542..1663552 (+)	1011	WP_018926234.1	tetraacyldisaccharide 4'-kinase	-
LOY28_RS07335 (LOY28_07335)	-	1663578..1663763 (+)	186	WP_003179363.1	Trm112 family protein	-
LOY28_RS07340 (LOY28_07340)	kdsB	1663760..1664524 (+)	765	WP_258613280.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
LOY28_RS07345 (LOY28_07345)	-	1664524..1664988 (+)	465	WP_258613281.1	low molecular weight protein-tyrosine-phosphatase	-
LOY28_RS07350 (LOY28_07350)	murB	1664985..1666004 (+)	1020	WP_018926231.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 744 a.a.
• Molecular weight: 81687.00 Da
• Isoelectric Point: 9.9613

>NTDB_id=627811 LOY28_RS07315 WP_258613279.1 1659150..1661384(+) (comA) [Pseudomonas sp. B21-017]
MRTGMMALALGLLALRFLPALPPAGLWLLLPVVGLMLLPFRTFPLAFWLFGFSWACANAQWALDDRLALKLDGETRWVEG
RVTGLPQQAEGVVRFELTDSQSRRTQLPRHLRLAWYGGPPVNSGERWRLAVKLKRPAGLLNPHGFDYDAWLLAQRIGATG
TVKDGQRLGQAQWAWRDGIRQRLQAVDAHGRTGALTALVLGDGAGLSREDWQVLQDTGTVHLLVISGQHIGLLAGLVYLL
IAGLARYGLWPRRLPWLPWACGLAFAAALGYGLLAGFEVPVRRACLMIGLLLLWRLRFRHLGAWWPLLLALDGVLLLDPL
ASLQPGFWLSFAAVAVLIFTFGGRLGPWRWWQTWTRAQWLIAIGLCPLLLVLGLPISLSGPLANLLAVPWISLLVLPPAL
LGTLLLPVPYVGEGLLWLAGGLIDLLFKGLVLVAGQLPAWVPVAVPLWVWAFGALGAFLLLLPPGVPLRLLGWPMLLLLV
FAPRHTLPEGVAEIWQLDVGQGLAILVRTRHHTLLYDAGPRFGDIDLGERVVLPTLRKLGVNGLDLMLISHADADHAGGA
RAIASGVPVTRVLSGDPLALPEELHAEGCESGQQWTWDDVRFQLWQWSSASDSNQKSCVLHIEANGERLLLTGDIDTAAE
RVLLEGPLAVPTDWLQAPHHGSRSSSSMALLSALLPKAVLISRGNGNSFGHPHPTVVARYQKRGMAIYDSAEQGAIRLQL
GRFKPPWTMLQERRFWRDPPALRQ

Nucleotide

• Length: 2235 bp

>NTDB_id=627811 LOY28_RS07315 WP_258613279.1 1659150..1661384(+) (comA) [Pseudomonas sp. B21-017]
ATGCGCACAGGGATGATGGCGCTGGCGTTGGGTCTGCTGGCCCTGCGTTTTTTGCCGGCACTGCCGCCGGCAGGGTTGTG
GCTGTTGTTGCCGGTAGTGGGTTTGATGTTGTTGCCGTTTCGAACCTTTCCACTGGCATTTTGGTTGTTTGGCTTCAGTT
GGGCGTGTGCGAATGCGCAGTGGGCGCTGGATGATCGCCTGGCGCTGAAGCTCGATGGCGAGACTCGCTGGGTCGAAGGC
CGGGTTACCGGGTTGCCGCAGCAGGCCGAGGGTGTAGTGCGTTTCGAACTGACAGACAGTCAGTCGCGTCGCACCCAACT
GCCCCGGCACCTGCGTCTGGCCTGGTATGGCGGGCCGCCCGTCAACAGTGGCGAGCGGTGGCGGCTGGCAGTCAAATTGA
AGCGTCCTGCCGGGCTGCTCAACCCTCATGGTTTTGATTACGACGCCTGGTTGCTGGCCCAACGTATTGGCGCCACTGGG
ACCGTCAAGGACGGTCAGCGACTGGGGCAAGCGCAGTGGGCCTGGCGCGACGGCATTCGTCAGCGTTTGCAGGCCGTGGA
TGCGCACGGGCGAACGGGAGCGCTGACGGCGTTGGTGCTGGGGGACGGCGCCGGGCTGAGCCGTGAGGACTGGCAGGTGC
TGCAAGACACCGGCACCGTGCATCTGTTGGTGATTTCCGGGCAACACATTGGTTTGCTGGCGGGGCTGGTGTATCTGCTG
ATCGCCGGGCTGGCGCGCTATGGCTTATGGCCTAGGCGCTTGCCGTGGCTGCCATGGGCGTGTGGGCTGGCGTTCGCGGC
GGCGCTCGGTTATGGGCTGCTGGCCGGTTTCGAGGTGCCGGTGCGTCGGGCCTGCCTGATGATTGGTCTGCTGTTGTTGT
GGCGGCTACGGTTTCGTCACCTCGGCGCCTGGTGGCCGCTGTTGCTGGCGCTTGACGGTGTTTTGCTGCTGGACCCGCTG
GCAAGCCTGCAACCGGGTTTCTGGTTGTCCTTTGCGGCAGTAGCGGTGCTGATTTTCACCTTTGGTGGGCGATTGGGCCC
GTGGCGTTGGTGGCAAACCTGGACCCGTGCCCAATGGCTGATCGCAATCGGTCTGTGCCCGCTGCTGTTGGTACTGGGGT
TGCCGATCAGTCTCAGCGGGCCGCTGGCCAATCTTCTGGCGGTGCCCTGGATCAGCCTGCTGGTCTTGCCGCCGGCCTTG
CTCGGAACGCTGCTGTTGCCCGTTCCCTATGTGGGCGAGGGGTTACTGTGGTTAGCTGGCGGTCTGATCGACCTTTTGTT
CAAGGGGCTGGTGTTGGTGGCCGGGCAATTGCCCGCGTGGGTGCCGGTGGCGGTTCCGTTGTGGGTTTGGGCGTTCGGCG
CGCTGGGCGCATTTCTGCTGTTACTGCCACCGGGGGTGCCGTTGCGCCTGCTGGGCTGGCCGATGTTGCTGTTGCTGGTT
TTTGCGCCCCGGCACACGCTGCCTGAAGGCGTCGCCGAAATCTGGCAACTGGATGTCGGCCAGGGGTTGGCCATTCTGGT
GCGCACCCGCCATCACACTCTGCTGTATGACGCCGGGCCACGGTTCGGCGATATCGACTTGGGTGAGCGGGTGGTGTTGC
CAACATTGCGCAAACTGGGGGTGAATGGACTTGATCTGATGCTGATCAGCCATGCCGACGCCGATCACGCCGGCGGTGCG
CGAGCGATTGCCAGCGGTGTGCCGGTGACTCGGGTACTGAGTGGCGACCCACTGGCCCTGCCGGAGGAGCTACATGCCGA
GGGCTGCGAGAGCGGTCAACAGTGGACCTGGGACGACGTGCGGTTCCAGCTCTGGCAGTGGTCGTCGGCCAGCGACAGCA
ATCAGAAATCCTGCGTGCTGCACATCGAAGCCAACGGCGAGCGGTTGTTGCTGACCGGCGATATCGATACCGCGGCCGAG
CGGGTGCTGCTCGAAGGTCCATTGGCGGTGCCGACGGACTGGTTGCAGGCCCCGCACCACGGCAGTCGCAGTTCATCTTC
GATGGCGTTGCTCAGCGCTCTGCTGCCTAAAGCGGTGCTGATTTCCCGTGGCAACGGTAATTCTTTCGGTCATCCCCATC
CCACAGTCGTGGCGCGTTATCAAAAGCGTGGCATGGCGATCTACGACAGCGCCGAGCAGGGTGCCATTCGTCTACAACTG
GGGCGCTTCAAACCACCTTGGACGATGCTTCAGGAACGGCGTTTCTGGCGCGATCCGCCAGCATTGCGCCAGTAG

Domains

Predicted by InterproScan.

• Competence protein (Competence) (198-463)

• Domain of unknown function (DUF4131) (DUF4131) (22-167)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-680)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	63.7	96.64	0.616
comA	Ralstonia pseudosolanacearum GMI1000	33.573	100	0.376