Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LOY28_RS07320 Genome accession   NZ_CP087194
Coordinates   1661482..1662117 (+) Length   211 a.a.
NCBI ID   WP_007941964.1    Uniprot ID   J2VZZ3
Organism   Pseudomonas sp. B21-017     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1656482..1667117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY28_RS07300 (LOY28_07300) - 1656712..1657644 (+) 933 WP_018926239.1 ABC transporter ATP-binding protein -
  LOY28_RS07305 (LOY28_07305) - 1657641..1658420 (+) 780 WP_018926238.1 ABC transporter permease -
  LOY28_RS07310 (LOY28_07310) - 1658492..1659013 (-) 522 WP_018926237.1 DUF2062 domain-containing protein -
  LOY28_RS07315 (LOY28_07315) comA 1659150..1661384 (+) 2235 WP_258613279.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LOY28_RS07320 (LOY28_07320) exbB 1661482..1662117 (+) 636 WP_007941964.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LOY28_RS07325 (LOY28_07325) - 1662114..1662542 (+) 429 WP_018926235.1 biopolymer transporter ExbD -
  LOY28_RS07330 (LOY28_07330) lpxK 1662542..1663552 (+) 1011 WP_018926234.1 tetraacyldisaccharide 4'-kinase -
  LOY28_RS07335 (LOY28_07335) - 1663578..1663763 (+) 186 WP_003179363.1 Trm112 family protein -
  LOY28_RS07340 (LOY28_07340) kdsB 1663760..1664524 (+) 765 WP_258613280.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LOY28_RS07345 (LOY28_07345) - 1664524..1664988 (+) 465 WP_258613281.1 low molecular weight protein-tyrosine-phosphatase -
  LOY28_RS07350 (LOY28_07350) murB 1664985..1666004 (+) 1020 WP_018926231.1 UDP-N-acetylmuramate dehydrogenase -
  LOY28_RS07355 (LOY28_07355) - 1666247..1666717 (+) 471 WP_018926230.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22911.14 Da        Isoelectric Point: 6.8770

>NTDB_id=627812 LOY28_RS07320 WP_007941964.1 1661482..1662117(+) (exbB) [Pseudomonas sp. B21-017]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFMGTGMGTNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVIQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=627812 LOY28_RS07320 WP_007941964.1 1661482..1662117(+) (exbB) [Pseudomonas sp. B21-017]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCGGCCATGGCGATCGTCGC
CGAGCGTCTCTGGACCCTGCGCGCCAGCCGCGTGACCCCGGAGCACTTGCTCGGGCAGGTCTGGGTCTGGATCAAGGACA
AGCAACTCAATAAAGAAAAACTCAAGGAGTTGCGCGCCAACTCTCCGCTGGGCGAGATCCTCGCTGCCGGTCTGGCGAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCCGCGCGGGTGATTCATGAGCTCGAACGTTACAT
CAACGCCTTGGGCACCATCGCCGCCATGGCTCCGTTGCTGGGGCTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCA
GTGCGTTCATGGGCACGGGCATGGGCACCAACGCCGCGGTGCTGGCCGGGGGTATTTCCAAGGCCTTGATCACCACCGCC
GCGGGCCTGATGGTCGGTATCCCGGCCGTGTTCTTCCACCGCTTCCTGCAACGCCGGATCGATGAGCTGGTGGTGGGCAT
GGAGCAAGAGGCGATCAAACTGGTCGAGGTTATTCAGGGCGATCGCGACGTGGACCTGGCCGAGGGTAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J2VZZ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.308

100

0.853