Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   LOY36_RS24390 Genome accession   NZ_CP087193
Coordinates   5438462..5439808 (+) Length   448 a.a.
NCBI ID   WP_019650972.1    Uniprot ID   A0A2W7JFD7
Organism   Pseudomonas sp. B21-019     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5433462..5444808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY36_RS24365 (LOY36_24325) pgeF 5433667..5434389 (-) 723 WP_019650975.1 peptidoglycan editing factor PgeF -
  LOY36_RS24370 (LOY36_24330) rluD 5434386..5435348 (-) 963 WP_007901932.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LOY36_RS24375 (LOY36_24335) - 5435500..5436516 (+) 1017 WP_258671192.1 outer membrane protein assembly factor BamD -
  LOY36_RS24380 (LOY36_24340) - 5436653..5436886 (+) 234 WP_007938406.1 PP0621 family protein -
  LOY36_RS24385 (LOY36_24345) pilS 5436876..5438465 (+) 1590 WP_258671193.1 PAS domain-containing sensor histidine kinase Regulator
  LOY36_RS24390 (LOY36_24350) pilR 5438462..5439808 (+) 1347 WP_019650972.1 sigma-54 dependent transcriptional regulator Regulator
  LOY36_RS24395 (LOY36_24355) thiO 5439828..5440928 (-) 1101 WP_258671194.1 glycine oxidase ThiO -
  LOY36_RS24400 (LOY36_24360) - 5440985..5441386 (-) 402 WP_019581258.1 type IV pilin protein -
  LOY36_RS24405 (LOY36_24365) - 5441401..5444523 (-) 3123 WP_258671195.1 pilus assembly protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 49874.28 Da        Isoelectric Point: 7.0909

>NTDB_id=627797 LOY36_RS24390 WP_019650972.1 5438462..5439808(+) (pilR) [Pseudomonas sp. B21-019]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLDTFSARNLAEAQALLARDTFDLCLTDMRLPDGTGLALVQHIQQRYAQVP
VAMITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVISALSLPAPGGTSSGIDRRLLGDSLPMRNLRKQIDKLARSQA
PVYISGESGSGKELVARLIHDQGPRASRPFVPVNCGAIPSELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRSIGGQQETVVDVRILCATHKDLDAEVAAERFRQDLYYRLNVIELRVPSLRERRDDIELLA
NNMLKRLAASTGQPPAKLHPQALEALKNYRFPGNVRELENMLERAHTLCENKQIEASDLRLAEGNCNPDGGVPDLTQIDN
LEAYLENVERKLILQALEETRWNRTAAAQRLNLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=627797 LOY36_RS24390 WP_019650972.1 5438462..5439808(+) (pilR) [Pseudomonas sp. B21-019]
TTGAACACGAGCCCACGGCAAAAAATCCTCATCGTCGACGACGAGCCGGATATCCGCGAACTCCTGGAAATCACCCTGGG
ACGGATGAAACTCGACACCTTCAGCGCACGCAACCTCGCAGAAGCGCAGGCGCTACTGGCTCGGGATACGTTCGACCTGT
GCCTGACCGACATGCGCCTGCCTGACGGCACCGGTCTGGCGCTGGTGCAGCACATCCAGCAGCGCTATGCACAAGTGCCG
GTGGCGATGATCACCGCCTACGGCAGCCTGGAGACAGCAATAAATGCCCTCAAGGCCGGCGCCTTCGACTTCCTGACCAA
ACCGGTCGACCTCACCCGCCTGCGCGAACTGGTCATCAGCGCCCTGAGCTTGCCAGCGCCAGGCGGCACCAGCAGCGGCA
TCGACCGTCGACTGCTGGGCGACTCGCTGCCAATGCGCAACCTGCGCAAACAAATCGACAAACTGGCCCGCAGCCAGGCT
CCGGTGTACATCAGTGGCGAGTCCGGCAGCGGCAAGGAACTGGTCGCTCGACTGATCCACGACCAAGGCCCGCGCGCCAG
CCGACCGTTCGTCCCGGTGAACTGTGGGGCAATCCCGTCAGAACTGATGGAAAGCGAGTTTTTCGGCCATCGCAAAGGCA
GTTTCAGCGGCGCCATCGAAGACAAGCCCGGGCTGTTCCAGGCCGCCCATGGCGGTACATTGTTCCTCGACGAAGTGGCT
GACCTGCCGCTGGCAATGCAGGTCAAACTGCTGCGGGCGATTCAGGAGAAAGCCGTTCGCAGCATCGGTGGCCAGCAGGA
AACCGTGGTCGATGTGCGCATCCTCTGCGCCACACACAAAGACCTCGACGCCGAAGTCGCCGCCGAACGCTTTCGCCAGG
ACCTGTACTACCGCCTGAACGTGATCGAGCTGCGAGTACCGTCCTTGCGCGAACGCCGCGACGACATTGAGCTTCTGGCC
AACAATATGCTCAAGCGACTGGCGGCCAGCACTGGCCAACCCCCAGCAAAACTCCACCCGCAAGCCCTCGAAGCGCTGAA
AAACTATCGCTTTCCTGGAAACGTGCGGGAATTGGAGAACATGCTCGAGCGGGCTCACACCTTGTGCGAGAACAAACAGA
TCGAAGCCAGCGACCTGCGCCTGGCTGAAGGCAACTGCAACCCGGACGGCGGCGTGCCGGACCTGACACAGATCGATAAT
CTGGAAGCCTATCTGGAAAACGTCGAACGCAAACTCATCCTCCAGGCCCTGGAAGAAACCCGCTGGAACCGCACGGCGGC
GGCCCAGCGATTGAATCTGTCGTTTCGGTCGATGCGTTACAGGCTGAAGAAATTGGGGCTGGATTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(405-445)

Response regulator receiver domain (Response_reg)

(9-118)

Sigma-54 interaction domain (Sigma54_activat)

(139-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2W7JFD7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

79.233

98.884

0.783
  pilR Acinetobacter baumannii strain A118

49.02

100

0.502