Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   LOY36_RS24385 Genome accession   NZ_CP087193
Coordinates   5436876..5438465 (+) Length   529 a.a.
NCBI ID   WP_258671193.1    Uniprot ID   -
Organism   Pseudomonas sp. B21-019     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5431876..5443465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY36_RS24365 (LOY36_24325) pgeF 5433667..5434389 (-) 723 WP_019650975.1 peptidoglycan editing factor PgeF -
  LOY36_RS24370 (LOY36_24330) rluD 5434386..5435348 (-) 963 WP_007901932.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LOY36_RS24375 (LOY36_24335) - 5435500..5436516 (+) 1017 WP_258671192.1 outer membrane protein assembly factor BamD -
  LOY36_RS24380 (LOY36_24340) - 5436653..5436886 (+) 234 WP_007938406.1 PP0621 family protein -
  LOY36_RS24385 (LOY36_24345) pilS 5436876..5438465 (+) 1590 WP_258671193.1 PAS domain-containing sensor histidine kinase Regulator
  LOY36_RS24390 (LOY36_24350) pilR 5438462..5439808 (+) 1347 WP_019650972.1 sigma-54 dependent transcriptional regulator Regulator
  LOY36_RS24395 (LOY36_24355) thiO 5439828..5440928 (-) 1101 WP_258671194.1 glycine oxidase ThiO -
  LOY36_RS24400 (LOY36_24360) - 5440985..5441386 (-) 402 WP_019581258.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58641.47 Da        Isoelectric Point: 7.1685

>NTDB_id=627796 LOY36_RS24385 WP_258671193.1 5436876..5438465(+) (pilS) [Pseudomonas sp. B21-019]
MIAETPSPGNKQAQRLLRLYHLYRLSVGITLVLLISSNMDNQLLKFANDDLLRNGSWLYLVLNILLVVFLGNTRRPAQLF
GLALVDVLLLCGLFYAAGGMASAIGNLLIVSVAISNTLLRGRFGLLIAAVGALGIVGLSFILSFNHPASPSDYLQIGTLG
ALCFAAALLVQGLTRRLEVSETLAEQRASEVLGLEALNALILQRMRTGILVLDNQRRVQLANHSALTLLGQEKLDGQLID
DYSTPLVERLQLWLNNPTLRPQSLQIASNGLELQPSFIALDQSPHHQTLVFLEDLAQIAQQAQQLKLAALGRLTAGIAHE
IRNPLGAISHAAQLLQESEELNGADRRLTQIIQDQSQRMNRVIENVLQLSRRQQTVPQRLDLKPWLEHFVAETREGSKEH
QQIHLRIGSGDFKTLMDPDQLTQILDNLLRNAWRHSALKHDRAQAWLELFVDPDSQLPTLEVLDDGPGVAPDQRTHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKSRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=627796 LOY36_RS24385 WP_258671193.1 5436876..5438465(+) (pilS) [Pseudomonas sp. B21-019]
GTGATCGCTGAGACGCCCAGCCCAGGCAACAAACAGGCCCAGCGACTGCTGCGCCTCTATCACCTCTACCGCTTAAGCGT
CGGCATCACCCTGGTGCTGTTGATCTCCAGCAACATGGACAACCAGTTGCTGAAGTTCGCCAATGACGACCTGCTGCGCA
ACGGCAGCTGGTTGTACCTGGTGCTGAATATCCTGCTGGTGGTCTTTCTGGGGAACACCCGGCGCCCCGCGCAGCTGTTC
GGCCTGGCGCTGGTCGATGTCCTGCTGCTGTGCGGCCTGTTCTATGCCGCAGGCGGCATGGCCAGTGCCATCGGCAATTT
GCTGATCGTCTCAGTGGCCATCAGCAATACCTTGCTGCGCGGGCGTTTCGGTCTGCTGATCGCAGCGGTCGGTGCCCTTG
GCATTGTGGGTTTGAGCTTCATCCTGAGCTTCAACCACCCCGCCAGCCCCAGCGATTACCTGCAAATCGGCACCCTCGGC
GCCCTGTGTTTTGCCGCGGCGCTGCTGGTGCAGGGCTTGACCCGACGATTGGAGGTCAGCGAAACCCTGGCCGAACAGCG
GGCCAGTGAAGTGCTCGGTCTCGAAGCCCTCAACGCACTGATCCTGCAACGCATGCGCACGGGCATTCTGGTGCTCGACA
ACCAGCGGCGGGTGCAACTGGCCAATCACAGCGCCTTGACCTTGCTGGGGCAGGAAAAACTGGACGGCCAGTTGATCGAC
GATTACTCGACACCGTTGGTCGAGCGGCTCCAACTGTGGCTCAACAATCCAACGTTGCGCCCGCAAAGCCTGCAGATCGC
CAGCAACGGCCTGGAGCTGCAACCAAGCTTCATTGCCCTGGACCAAAGCCCGCACCACCAGACGCTGGTTTTTCTCGAAG
ACCTCGCCCAAATCGCCCAACAGGCCCAACAACTGAAACTCGCGGCCTTAGGTCGCCTGACCGCCGGGATTGCCCATGAG
ATCCGCAATCCACTGGGCGCCATTAGTCATGCCGCGCAGTTACTGCAGGAATCCGAGGAACTGAACGGCGCGGACCGGCG
TCTGACGCAGATTATTCAAGACCAATCTCAGCGCATGAATCGGGTAATCGAAAACGTCCTGCAATTGTCCCGTCGCCAGC
AAACCGTGCCGCAACGGCTCGATTTGAAGCCGTGGCTGGAGCATTTCGTCGCCGAAACCCGCGAAGGCTCGAAAGAACAT
CAGCAGATTCACCTGCGCATCGGTTCGGGAGACTTCAAAACCCTGATGGATCCGGATCAGCTGACCCAGATTCTCGATAA
CCTGTTGCGCAATGCCTGGCGCCATAGCGCCCTCAAGCATGATCGGGCGCAGGCCTGGCTCGAGTTGTTTGTCGACCCGG
ACAGCCAGTTGCCGACCCTGGAAGTCCTGGACGATGGCCCCGGCGTTGCACCGGACCAGCGTACTCACCTGTTCGAACCG
TTCTTCACCACCAGCAGCCAGGGTACTGGCCTGGGGCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAATCAAGCCCGCCT
AGACTTCAAATCACGCCAAGGCGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-521)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60.189

100

0.603