Detailed information NTG0627782

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: LOY36_RS07310
• Genome accession: NZ_CP087193
• Coordinates: 1638571..1640805 (+)
• Length: 744 a.a.
• NCBI ID: WP_258672793.1
• Uniprot ID: -
• Organism: Pseudomonas sp. B21-019
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1633571..1645805

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LOY36_RS07285 (LOY36_07280)	-	1633993..1634652 (+)	660	WP_258672790.1	transglutaminase family protein	-
LOY36_RS07290 (LOY36_07285)	-	1634697..1635320 (+)	624	WP_258672792.1	glutathione S-transferase family protein	-
LOY36_RS07295 (LOY36_07290)	-	1635454..1636386 (+)	933	WP_019650417.1	ABC transporter ATP-binding protein	-
LOY36_RS07300 (LOY36_07295)	-	1636383..1637162 (+)	780	WP_018926238.1	ABC transporter permease	-
LOY36_RS07305 (LOY36_07300)	-	1637913..1638434 (-)	522	WP_205889459.1	DUF2062 domain-containing protein	-
LOY36_RS07310 (LOY36_07305)	comA	1638571..1640805 (+)	2235	WP_258672793.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
LOY36_RS07315 (LOY36_07310)	exbB	1640903..1641538 (+)	636	WP_007941964.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
LOY36_RS07320 (LOY36_07315)	-	1641535..1641963 (+)	429	WP_018926235.1	biopolymer transporter ExbD	-
LOY36_RS07325 (LOY36_07320)	lpxK	1641963..1642973 (+)	1011	WP_019650420.1	tetraacyldisaccharide 4'-kinase	-
LOY36_RS07330 (LOY36_07325)	-	1642999..1643184 (+)	186	WP_003179363.1	Trm112 family protein	-
LOY36_RS07335 (LOY36_07330)	kdsB	1643181..1643945 (+)	765	WP_018926233.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
LOY36_RS07340 (LOY36_07335)	-	1643945..1644409 (+)	465	WP_019650421.1	low molecular weight protein-tyrosine-phosphatase	-
LOY36_RS07345 (LOY36_07340)	murB	1644406..1645425 (+)	1020	WP_258672796.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 744 a.a.
• Molecular weight: 81569.77 Da
• Isoelectric Point: 10.0755

>NTDB_id=627782 LOY36_RS07310 WP_258672793.1 1638571..1640805(+) (comA) [Pseudomonas sp. B21-019]
MRTGMMALALGLLALRFLPALPPAGLWLLLPVVGLMLLPFRTFPLAFWLFGFSWACANAQWALDDRLVLKLDGETRWVEG
RVTGLPQQAEGVVRFELTDSQSRRTQLPRHLRLAWYGGPPVNSGERWRLAVKLKRPAGLLNPHGFDYDAWLLAQRIGATG
TVKDGQRLGQAQWAWRDGIRQRLQAVDAQGRTGALTALVLGDGAGLSREDWQVLQDTGTVHLLVISGQHIGLLAGLVYLL
IAGLARYGLWPRRLPWLPWACGLAFAAALGYGLLAGFEVPVRRACLMIGLLLLWRLRFRHLGAWWPLLLALDGVLLLDPL
ASLQPGFWLSFAAVAVLIFTFGGRLGPWRWWQTWTRAQWLIAIGLCPLLLVLGLPISLSGPLANLLAVPWISLLVLPPAL
LGTLLLPVPYVGEGLLWLAGGLIDLLFKGLALVAGQLPAWVPVAVPLWVWAFGALGAFLLLLPPGVPLRPLGWPMLLLLV
FAPRHTLPEGVAEVWQLDVGQGLAILVRTRHHTLLYDAGPRFGDIDLGARVVLPSLRKLGVNGLDLMLISHADADHAGGA
RAIASGVPVTRVLSGDPLALPDELHAEGCESGQQWTWDDVRFQLWQWPSASDSNQKSCVLQVEANGERLLLTGDIDTAAE
RALLDSPLAVSTDWLQAPHHGSRSSSSMALLSALQPKAVLISRGNGNSFGHPHPTVVARYQKRGMAIYDSAEQGAIRLQL
GRFKPPWTMLQERRFWRDPPVLRQ

Nucleotide

• Length: 2235 bp

>NTDB_id=627782 LOY36_RS07310 WP_258672793.1 1638571..1640805(+) (comA) [Pseudomonas sp. B21-019]
ATGCGCACAGGGATGATGGCGCTGGCGTTGGGTCTGCTGGCCCTGCGTTTTTTACCGGCATTGCCGCCGGCGGGGTTGTG
GCTGTTGTTGCCGGTAGTGGGTTTGATGTTGCTGCCGTTTCGAACCTTTCCACTGGCATTTTGGTTGTTCGGTTTCAGTT
GGGCGTGTGCGAATGCGCAGTGGGCGCTGGATGATCGCCTGGTGCTGAAGCTCGATGGCGAGACTCGCTGGGTCGAAGGT
CGTGTCACCGGTTTGCCGCAGCAGGCCGAGGGTGTAGTGCGTTTCGAACTGACAGACAGTCAGTCGCGTCGCACCCAACT
GCCCCGGCACCTGCGTCTGGCTTGGTATGGTGGGCCGCCCGTCAACAGTGGCGAGCGGTGGCGGCTGGCAGTCAAATTGA
AGCGTCCTGCCGGGCTGCTCAACCCCCATGGTTTTGATTACGACGCCTGGTTGCTGGCCCAACGTATTGGCGCCACCGGG
ACCGTCAAGGACGGTCAGCGACTGGGGCAAGCGCAGTGGGCCTGGCGCGACGGCATTCGTCAGCGTTTGCAGGCCGTGGA
TGCGCAGGGGCGAACGGGGGCGCTGACGGCGTTGGTGCTGGGGGACGGCGCCGGGCTCAGCCGTGAGGACTGGCAGGTGC
TGCAAGACACCGGCACCGTGCATTTGTTGGTGATTTCCGGGCAGCACATTGGTTTGCTGGCGGGGCTGGTGTATCTGCTG
ATCGCCGGGCTGGCGCGCTATGGCTTATGGCCCAGGCGCTTGCCGTGGCTGCCATGGGCGTGTGGGCTGGCGTTCGCGGC
AGCGCTCGGTTATGGGTTGCTGGCCGGTTTCGAGGTGCCGGTGCGTCGGGCCTGCCTGATGATCGGTCTGCTGTTGTTGT
GGCGGCTACGGTTTCGTCACCTCGGCGCCTGGTGGCCGCTGTTGCTGGCGCTTGACGGTGTTTTGCTGCTGGACCCGCTG
GCAAGTCTGCAACCGGGTTTCTGGTTGTCTTTTGCGGCGGTAGCGGTGCTGATTTTCACCTTTGGCGGGCGATTGGGCCC
GTGGCGTTGGTGGCAAACCTGGACCCGTGCCCAATGGCTGATCGCAATCGGTCTGTGCCCACTGCTGTTGGTGCTGGGGT
TGCCGATCAGTCTCAGCGGGCCGCTGGCCAATCTGCTGGCGGTGCCCTGGATCAGCCTGCTGGTCTTGCCGCCGGCCTTG
CTCGGAACGCTGCTGTTGCCCGTTCCTTATGTGGGCGAGGGGTTGCTGTGGTTGGCTGGCGGTCTGATCGACCTTTTGTT
CAAGGGGCTGGCGTTGGTGGCCGGGCAATTGCCCGCGTGGGTGCCGGTGGCGGTTCCGCTGTGGGTTTGGGCGTTCGGCG
CGCTGGGCGCATTTCTGCTGTTACTGCCACCGGGCGTGCCGTTGCGCCCGCTGGGCTGGCCGATGTTGCTGTTGCTGGTT
TTTGCGCCCCGGCACACGCTGCCTGAAGGCGTCGCCGAGGTCTGGCAACTGGATGTCGGCCAAGGGTTGGCCATCCTGGT
GCGCACCCGCCATCACACTCTGTTGTATGACGCCGGGCCGCGTTTCGGCGATATCGACCTTGGGGCGCGGGTGGTGTTGC
CATCGTTGCGCAAACTGGGGGTGAACGGACTCGATCTGATGCTGATCAGCCACGCCGACGCCGATCACGCCGGCGGTGCG
CGAGCGATTGCCAGCGGTGTGCCGGTGACGCGGGTACTGAGTGGCGATCCACTGGCCCTGCCGGACGAGTTACATGCCGA
GGGCTGTGAGAGCGGTCAACAGTGGACCTGGGACGACGTGCGGTTCCAGCTCTGGCAGTGGCCGTCGGCCAGTGACAGCA
ATCAGAAATCCTGCGTGCTGCAGGTCGAAGCCAACGGTGAGCGGTTGCTGCTGACTGGCGATATCGATACGGCGGCCGAG
CGGGCGCTGCTCGACAGTCCATTGGCGGTGTCGACGGACTGGTTGCAGGCCCCGCACCACGGCAGTCGCAGTTCATCTTC
GATGGCGTTGCTCAGCGCTCTGCAGCCTAAAGCGGTACTGATTTCCCGTGGCAACGGTAATTCTTTCGGTCATCCCCATC
CCACAGTCGTGGCGCGTTATCAAAAGCGTGGCATGGCGATCTACGACAGTGCCGAGCAGGGTGCCATTCGTCTACAACTG
GGGCGCTTCAAACCACCTTGGACGATGCTTCAGGAACGGCGTTTCTGGCGCGATCCGCCAGTATTGCGCCAGTAG

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-681)

• Domain of unknown function (DUF4131) (DUF4131) (22-167)

• Competence protein (Competence) (198-463)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	64.256	96.64	0.621
comA	Ralstonia pseudosolanacearum GMI1000	33.693	100	0.378