Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LOY36_RS07315 Genome accession   NZ_CP087193
Coordinates   1640903..1641538 (+) Length   211 a.a.
NCBI ID   WP_007941964.1    Uniprot ID   J2VZZ3
Organism   Pseudomonas sp. B21-019     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1635903..1646538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY36_RS07300 (LOY36_07295) - 1636383..1637162 (+) 780 WP_018926238.1 ABC transporter permease -
  LOY36_RS07305 (LOY36_07300) - 1637913..1638434 (-) 522 WP_205889459.1 DUF2062 domain-containing protein -
  LOY36_RS07310 (LOY36_07305) comA 1638571..1640805 (+) 2235 WP_258672793.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LOY36_RS07315 (LOY36_07310) exbB 1640903..1641538 (+) 636 WP_007941964.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LOY36_RS07320 (LOY36_07315) - 1641535..1641963 (+) 429 WP_018926235.1 biopolymer transporter ExbD -
  LOY36_RS07325 (LOY36_07320) lpxK 1641963..1642973 (+) 1011 WP_019650420.1 tetraacyldisaccharide 4'-kinase -
  LOY36_RS07330 (LOY36_07325) - 1642999..1643184 (+) 186 WP_003179363.1 Trm112 family protein -
  LOY36_RS07335 (LOY36_07330) kdsB 1643181..1643945 (+) 765 WP_018926233.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LOY36_RS07340 (LOY36_07335) - 1643945..1644409 (+) 465 WP_019650421.1 low molecular weight protein-tyrosine-phosphatase -
  LOY36_RS07345 (LOY36_07340) murB 1644406..1645425 (+) 1020 WP_258672796.1 UDP-N-acetylmuramate dehydrogenase -
  LOY36_RS07350 (LOY36_07345) - 1645669..1646139 (+) 471 WP_019650423.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22911.14 Da        Isoelectric Point: 6.8770

>NTDB_id=627783 LOY36_RS07315 WP_007941964.1 1640903..1641538(+) (exbB) [Pseudomonas sp. B21-019]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFMGTGMGTNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVIQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=627783 LOY36_RS07315 WP_007941964.1 1640903..1641538(+) (exbB) [Pseudomonas sp. B21-019]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCGGCCATGGCGATCGTCGC
CGAGCGTCTCTGGACCCTGCGCGCCAGCCGCGTGACCCCGGAGCACTTGCTCGGGCAGGTCTGGGTCTGGATCAAGGACA
AGCAACTCAATAAAGAAAAACTCAAGGAACTGCGCGCCAACTCTCCGCTGGGCGAGATCCTCGCCGCCGGTCTGGCGAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCCGCGCGGGTGATTCATGAGCTCGAACGTTACAT
CAACGCCCTGGGCACCATCGCCGCCATGGCTCCGTTGCTGGGGCTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCA
GTGCGTTCATGGGCACGGGCATGGGCACCAACGCCGCGGTGCTGGCCGGGGGTATTTCCAAGGCACTGATCACCACCGCC
GCCGGCCTGATGGTCGGTATCCCGGCCGTGTTCTTCCACCGCTTCCTGCAACGCCGGATCGATGAGCTGGTGGTGGGCAT
GGAGCAAGAGGCGATCAAACTGGTCGAGGTTATTCAGGGCGATCGCGACGTGGACCTGGCCGAGGGTAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J2VZZ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.308

100

0.853