Detailed information NTG0627768

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: LOY31_RS24825
• Genome accession: NZ_CP087192
• Coordinates: 5522378..5523724 (+)
• Length: 448 a.a.
• NCBI ID: WP_258712324.1
• Uniprot ID: -
• Organism: Pseudomonas sp. B21-021
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5517378..5528724

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LOY31_RS24800 (LOY31_24780)	pgeF	5517593..5518315 (-)	723	WP_258712323.1	peptidoglycan editing factor PgeF	-
LOY31_RS24805 (LOY31_24785)	rluD	5518312..5519274 (-)	963	WP_007959567.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
LOY31_RS24810 (LOY31_24790)	-	5519427..5520443 (+)	1017	WP_007959566.1	outer membrane protein assembly factor BamD	-
LOY31_RS24815 (LOY31_24795)	-	5520569..5520802 (+)	234	WP_039771683.1	PP0621 family protein	-
LOY31_RS24820 (LOY31_24800)	pilS	5520792..5522381 (+)	1590	WP_258713629.1	PAS domain-containing sensor histidine kinase	Regulator
LOY31_RS24825 (LOY31_24805)	pilR	5522378..5523724 (+)	1347	WP_258712324.1	sigma-54 dependent transcriptional regulator	Regulator
LOY31_RS24830 (LOY31_24810)	thiO	5523784..5524884 (-)	1101	WP_258712325.1	glycine oxidase ThiO	-
LOY31_RS24835 (LOY31_24815)	-	5524941..5525342 (-)	402	WP_039771691.1	type IV pilin protein	-
LOY31_RS24840 (LOY31_24820)	-	5525357..5528449 (-)	3093	WP_258712326.1	pilus assembly protein	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 50104.42 Da
• Isoelectric Point: 6.5109

>NTDB_id=627768 LOY31_RS24825 WP_258712324.1 5522378..5523724(+) (pilR) [Pseudomonas sp. B21-021]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLDTFSARNLNEAQALLHRETFDLCLTDMRLPDGTGLELVQHIQQRYPQLP
VAMITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVGSALRMPAPGNVCTSIDRLLLGDSPPMRNLRKQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRASQPFVPVNCGAIPSELMESEFFGHRKGSFSGAVEDKPGLFQAAHGGTLFLDEVA
DLPLPMQVKLLRAIQEKAVRSVGGQQETVVDVRILCATHKDLDAEVAAERFRQDLYYRLNVIELRVPSLRERREDIEALA
VHMLKRLANGTGQPAARLHPHALEALKNYRFPGNVRELENVLERAHTLCENRTIEAEDLRLSEGNGTAEGGIADLTQIDN
LEDYLESVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1347 bp

>NTDB_id=627768 LOY31_RS24825 WP_258712324.1 5522378..5523724(+) (pilR) [Pseudomonas sp. B21-021]
TTGAACACGAGCCCACGGCAAAAAATCCTCATCGTCGACGACGAGCCGGATATCCGCGAACTCCTGGAAATCACCCTGGG
ACGGATGAAACTCGACACCTTCAGCGCACGCAATCTCAATGAAGCCCAGGCGCTGCTGCACCGCGAGACCTTCGACCTGT
GCCTGACCGACATGCGCCTGCCCGACGGCACGGGCCTGGAACTGGTGCAGCATATCCAGCAACGTTATCCACAACTGCCG
GTGGCAATGATCACCGCGTACGGCAGCCTGGAAACGGCAATCAACGCCCTGAAGGCCGGGGCATTCGACTTCCTGACCAA
ACCGGTGGACCTGACACGCCTTCGCGAACTGGTCGGCTCGGCGTTGCGCATGCCGGCGCCGGGCAATGTCTGCACTTCGA
TCGACCGGCTGCTTCTCGGCGATTCACCACCGATGCGCAATCTGCGCAAGCAGATCGACAAACTGGCCCGCAGCCAGGCA
CCGGTTTACATCAGCGGCGAATCCGGCAGCGGCAAGGAACTGGTGGCCCGGCTGATTCATGAACAGGGCCCGCGCGCCAG
CCAGCCATTCGTGCCGGTGAACTGCGGGGCGATTCCGTCCGAGTTGATGGAAAGCGAGTTCTTCGGCCACCGCAAAGGCA
GTTTCAGTGGCGCGGTGGAGGATAAACCGGGGCTGTTTCAGGCGGCCCACGGCGGCACGCTGTTTCTCGATGAAGTGGCG
GACCTGCCACTGCCGATGCAGGTCAAGCTGCTGCGGGCGATTCAGGAAAAAGCCGTGCGCAGCGTCGGCGGCCAACAGGA
AACCGTGGTCGATGTGCGCATACTCTGCGCAACGCACAAGGACCTCGATGCGGAAGTGGCTGCCGAGCGTTTTCGTCAGG
ATCTGTATTACCGGCTCAACGTGATCGAACTGCGTGTGCCGTCCCTGCGCGAACGTCGCGAGGACATCGAAGCACTGGCC
GTCCATATGCTCAAGCGCCTGGCCAATGGCACCGGGCAACCGGCTGCACGTCTTCATCCTCATGCCCTAGAGGCGCTGAA
AAACTACCGTTTTCCGGGCAACGTGCGGGAGCTGGAGAACGTGCTTGAGCGGGCACATACCCTGTGTGAAAACCGCACGA
TCGAGGCAGAGGATTTACGTCTGAGTGAAGGAAACGGCACTGCTGAAGGCGGCATTGCCGATCTCACGCAGATCGACAAC
CTGGAAGACTATCTGGAAAGCGTCGAGCGCAAACTGATTTTGCAGGCGCTGGAGGAGACTCGCTGGAATCGCACGGCGGC
AGCGCAGCGGTTGAGTCTTTCGTTTCGGTCGATGCGCTACAGGCTGAAGAAACTGGGGCTGGATTGA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (139-304)

• Response regulator receiver domain (Response_reg) (9-118)

• Bacterial regulatory protein, Fis family (HTH_8) (405-445)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	79.684	98.884	0.788
pilR	Acinetobacter baumannii strain A118	48.584	100	0.498