Detailed information NTG0627760

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: LOY31_RS21465
• Genome accession: NZ_CP087192
• Coordinates: 4798717..4800960 (-)
• Length: 747 a.a.
• NCBI ID: WP_221533170.1
• Uniprot ID: -
• Organism: Pseudomonas sp. B21-021
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4793717..4805960

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LOY31_RS21430 (LOY31_21410)	murB	4794117..4795136 (-)	1020	WP_221533167.1	UDP-N-acetylmuramate dehydrogenase	-
LOY31_RS21435 (LOY31_21415)	-	4795133..4795597 (-)	465	WP_221533168.1	low molecular weight protein-tyrosine-phosphatase	-
LOY31_RS21440 (LOY31_21420)	kdsB	4795597..4796361 (-)	765	WP_064383500.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
LOY31_RS21445 (LOY31_21425)	-	4796358..4796543 (-)	186	WP_003174668.1	Trm112 family protein	-
LOY31_RS21450 (LOY31_21430)	lpxK	4796568..4797578 (-)	1011	WP_221533169.1	tetraacyldisaccharide 4'-kinase	-
LOY31_RS21455 (LOY31_21435)	-	4797578..4798006 (-)	429	WP_007950767.1	biopolymer transporter ExbD	-
LOY31_RS21460 (LOY31_21440)	exbB	4798003..4798638 (-)	636	WP_007950766.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
LOY31_RS21465 (LOY31_21445)	comA	4798717..4800960 (-)	2244	WP_221533170.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
LOY31_RS21470 (LOY31_21450)	-	4801097..4801615 (+)	519	WP_007950764.1	DUF2062 domain-containing protein	-
LOY31_RS21475 (LOY31_21455)	-	4801670..4802449 (-)	780	WP_007950763.1	ABC transporter permease	-
LOY31_RS21480 (LOY31_21460)	-	4802446..4803378 (-)	933	WP_007950762.1	ABC transporter ATP-binding protein	-
LOY31_RS21485 (LOY31_21465)	-	4803512..4804135 (-)	624	WP_085607349.1	glutathione S-transferase family protein	-
LOY31_RS21490 (LOY31_21470)	-	4804179..4804838 (-)	660	WP_221533172.1	transglutaminase family protein	-

Sequence

Protein

• Length: 747 a.a.
• Molecular weight: 82147.20 Da
• Isoelectric Point: 10.1985

>NTDB_id=627760 LOY31_RS21465 WP_221533170.1 4798717..4800960(-) (comA) [Pseudomonas sp. B21-021]
MRTGMMALAVGLLAPVFLPALPPVGLLLVLPWVALMLLPFRSYPLAFLLLGFTWAGFNAQMALNDRLPSRLDGETRWVEG
RVVGLPQNAEGVVRFELADARSRHEKLPSLMRLAWYAGPEVKSGERWRLAVKLKRPGGLLNPDAFDYEAWLLAQRIGATG
TVKDGERLAPAQWAWRDSIRQRLLAVDAQGRNGALAALVLGDGSGLSREDWQTLQDTGTVHLLVISGQHIGLLAALMYAL
VAGLARVGIWPLRWPWLPWACGLAFTAALGYGLLAGFDVPVRRACVMVALVLLWRLRFRHLGAWWPLLLAFNGVLLMDPL
ASLRPGLWLSFIAVAVLIFTFGGRLGPWRWWQTWTRAQWLIAIGLCPVLVALSLPISLSGPLANLLAVPWVSFAVLPPAL
LGTLLLPIPYVGEGLLWLAGGLIDGLFRALALIAGRWPAWVPTTMEWWIWALGGLGALLLLLPRGVPLRSLGWPLLLVLA
FPPRERLAEGAADVWQLDVGQGLAILIRTRHHTLLYDSGPRFGDFDLGERVVLPALRKLGVEHLDLMLLSHADADHAGGA
LAVAKGLPVSRVISGDPPGLPEALNAEVCESGRQWQWDGVAFHLWQWADARDSNQRSCVLQIEANGERLLLTGDIDSAAE
RDLLNSALAVHTQWLQAPHHGSRSSSSMALLKTLQPQAVLISRGQGNSFGHPHPTVIARYRKQGIHIHDSAEQGAIHLQL
GRFQPARSMRQQRRFWRDPPLPGAEYR

Nucleotide

• Length: 2244 bp

>NTDB_id=627760 LOY31_RS21465 WP_221533170.1 4798717..4800960(-) (comA) [Pseudomonas sp. B21-021]
ATGCGCACAGGGATGATGGCGCTGGCGGTCGGTCTGCTGGCTCCGGTTTTTTTGCCGGCTTTGCCGCCGGTCGGGTTATT
GCTGGTGTTGCCGTGGGTGGCGCTGATGCTGCTGCCGTTTCGCAGCTATCCACTAGCGTTTTTGCTGCTTGGATTTACAT
GGGCGGGTTTCAACGCGCAGATGGCGTTGAATGACCGGCTGCCTTCCCGGCTGGATGGCGAAACGCGCTGGGTGGAAGGA
CGGGTCGTCGGCTTGCCGCAGAATGCCGAGGGCGTCGTGCGCTTCGAACTGGCCGATGCGCGCTCGCGTCACGAGAAACT
GCCGTCGCTGATGCGTCTGGCGTGGTACGCCGGGCCTGAGGTCAAAAGTGGCGAACGCTGGCGACTGGCAGTCAAGCTCA
AGCGCCCCGGTGGCCTGCTCAATCCGGATGCGTTCGATTACGAAGCCTGGCTGCTGGCGCAGCGCATCGGCGCCACCGGG
ACGGTGAAGGATGGCGAGCGCCTGGCGCCGGCGCAGTGGGCTTGGCGCGACAGCATTCGCCAGCGCCTGCTTGCAGTGGA
TGCCCAGGGACGTAACGGAGCCTTGGCCGCGTTGGTACTCGGTGATGGTTCGGGGCTCAGTCGCGAAGACTGGCAGACCT
TGCAGGACACCGGCACCGTGCACCTGCTGGTGATTTCCGGTCAGCACATCGGGCTGTTGGCGGCGTTGATGTATGCGCTG
GTCGCCGGGCTGGCGCGGGTCGGGATCTGGCCGTTGCGTTGGCCCTGGCTGCCCTGGGCGTGCGGTCTGGCATTCACGGC
GGCGCTGGGCTACGGCCTGCTGGCCGGGTTCGACGTGCCGGTGCGGCGGGCCTGCGTGATGGTTGCGCTGGTGTTGCTGT
GGCGATTGCGATTTCGCCATCTCGGTGCGTGGTGGCCTTTGTTGCTGGCCTTCAATGGTGTGCTGTTGATGGATCCGCTG
GCCAGTCTGCGTCCGGGGTTGTGGCTGTCCTTTATCGCGGTCGCCGTGCTGATCTTCACCTTCGGCGGCCGTCTGGGGCC
GTGGCGCTGGTGGCAGACCTGGACACGCGCGCAGTGGCTGATCGCGATCGGCTTGTGCCCGGTGCTGGTGGCGCTGAGCC
TGCCGATCAGTCTCAGCGGGCCACTGGCCAATCTGCTGGCGGTGCCGTGGGTCAGTTTCGCGGTGTTGCCGCCGGCGTTG
CTGGGCACTTTGTTGCTGCCGATCCCCTACGTCGGGGAAGGGCTGCTGTGGCTGGCCGGTGGACTGATCGATGGATTGTT
CCGGGCGCTGGCCCTGATTGCCGGGCGTTGGCCAGCGTGGGTGCCGACGACGATGGAGTGGTGGATCTGGGCGCTGGGAG
GTCTTGGTGCCCTGTTGTTATTACTGCCCCGAGGCGTTCCCTTGCGTTCCTTGGGCTGGCCATTGCTGCTGGTGTTGGCA
TTTCCGCCCCGGGAACGTCTGGCCGAAGGCGCAGCGGATGTGTGGCAACTGGACGTCGGCCAAGGCCTGGCGATTCTGAT
CCGCACCCGGCATCACACCTTGTTGTACGACAGCGGTCCGCGTTTCGGCGACTTCGACCTCGGTGAGCGAGTGGTGCTGC
CGGCATTGCGCAAACTGGGCGTGGAACACCTCGATCTGATGCTGCTCAGCCATGCCGATGCCGATCACGCAGGTGGCGCA
CTCGCCGTAGCGAAAGGATTGCCGGTCAGCCGGGTCATCAGCGGCGATCCGCCGGGTTTGCCTGAAGCGCTGAACGCCGA
GGTCTGTGAAAGCGGCCGGCAATGGCAGTGGGACGGCGTTGCCTTTCATCTATGGCAGTGGGCCGACGCCCGTGACAGCA
ACCAGCGTTCCTGCGTGTTGCAGATCGAAGCTAATGGCGAACGGTTATTGCTGACCGGTGACATCGACAGCGCTGCCGAA
CGGGATCTGCTCAACAGCGCGCTGGCAGTTCATACCCAATGGCTGCAAGCCCCGCATCACGGCAGCCGCAGCTCCTCATC
GATGGCCTTGCTCAAGACTTTGCAGCCTCAGGCCGTGCTGATTTCCCGAGGGCAGGGCAATTCGTTCGGCCATCCGCATC
CGACGGTCATTGCCCGCTACCGCAAACAGGGCATACACATCCATGACAGCGCCGAGCAGGGCGCCATTCATCTGCAACTG
GGGCGGTTTCAGCCAGCCCGGTCGATGCGTCAACAACGCCGCTTCTGGCGTGACCCGCCGTTGCCGGGGGCGGAGTACCG
TTGA

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (25-167)

• Competence protein (Competence) (198-464)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-678)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	63.004	96.252	0.606
comA	Ralstonia pseudosolanacearum GMI1000	34.606	100	0.364