Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LOY31_RS21460 Genome accession   NZ_CP087192
Coordinates   4798003..4798638 (-) Length   211 a.a.
NCBI ID   WP_007950766.1    Uniprot ID   -
Organism   Pseudomonas sp. B21-021     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4793003..4803638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY31_RS21425 (LOY31_21405) - 4793400..4793870 (-) 471 WP_007950774.1 (2Fe-2S)-binding protein -
  LOY31_RS21430 (LOY31_21410) murB 4794117..4795136 (-) 1020 WP_221533167.1 UDP-N-acetylmuramate dehydrogenase -
  LOY31_RS21435 (LOY31_21415) - 4795133..4795597 (-) 465 WP_221533168.1 low molecular weight protein-tyrosine-phosphatase -
  LOY31_RS21440 (LOY31_21420) kdsB 4795597..4796361 (-) 765 WP_064383500.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LOY31_RS21445 (LOY31_21425) - 4796358..4796543 (-) 186 WP_003174668.1 Trm112 family protein -
  LOY31_RS21450 (LOY31_21430) lpxK 4796568..4797578 (-) 1011 WP_221533169.1 tetraacyldisaccharide 4'-kinase -
  LOY31_RS21455 (LOY31_21435) - 4797578..4798006 (-) 429 WP_007950767.1 biopolymer transporter ExbD -
  LOY31_RS21460 (LOY31_21440) exbB 4798003..4798638 (-) 636 WP_007950766.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LOY31_RS21465 (LOY31_21445) comA 4798717..4800960 (-) 2244 WP_221533170.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LOY31_RS21470 (LOY31_21450) - 4801097..4801615 (+) 519 WP_007950764.1 DUF2062 domain-containing protein -
  LOY31_RS21475 (LOY31_21455) - 4801670..4802449 (-) 780 WP_007950763.1 ABC transporter permease -
  LOY31_RS21480 (LOY31_21460) - 4802446..4803378 (-) 933 WP_007950762.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22915.03 Da        Isoelectric Point: 6.8770

>NTDB_id=627759 LOY31_RS21460 WP_007950766.1 4798003..4798638(-) (exbB) [Pseudomonas sp. B21-021]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYVNALGTIAAMSPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAGEKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=627759 LOY31_RS21460 WP_007950766.1 4798003..4798638(-) (exbB) [Pseudomonas sp. B21-021]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCCGCCATGGCGATCGTCGC
CGAGCGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCTGAGCATCTGCTGGGTCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTCAACAAGGAAAAACTCAAGGAATTGCGCGCCAACTCGCCGTTGGGGGAAATCCTCGCCGCGGGCCTGGCCAAC
TCCAAACATGGTCGCGAGATCATGAAAGAGTGCATTGAAGAAGCGGCCGCTCGGGTCATCCACGAGCTGGAACGCTACGT
CAACGCGCTGGGCACCATCGCTGCCATGTCGCCGCTGCTCGGTCTGCTGGGTACGGTGCTGGGCATGATCGACATCTTCA
GTGCCTTCACCGGTTCCGGCATGACCACCAACGCTTCGGTGCTGGCCGGCGGTATTTCCAAGGCGCTGATCACCACCGCT
GCGGGCCTGATGGTCGGTATTCCGGCGGTGTTCTTTCACCGTTTCCTGCAACGCCGCATCGATGAACTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAACTGGTGGAAGTGGTGCAGGGCGACCGTGACGTCGATCTGGCCGGGGAAAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.36

100

0.844