Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   LOY45_RS18995 Genome accession   NZ_CP087191
Coordinates   4153516..4155738 (-) Length   740 a.a.
NCBI ID   WP_258578172.1    Uniprot ID   -
Organism   Pseudomonas wadenswilerensis strain B21-022     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4148516..4160738
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY45_RS18960 (LOY45_18920) murB 4148907..4149926 (-) 1020 WP_258578171.1 UDP-N-acetylmuramate dehydrogenase -
  LOY45_RS18965 (LOY45_18925) - 4149923..4150387 (-) 465 WP_115085916.1 low molecular weight protein-tyrosine-phosphatase -
  LOY45_RS18970 (LOY45_18930) kdsB 4150387..4151151 (-) 765 WP_115085915.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LOY45_RS18975 (LOY45_18935) - 4151148..4151333 (-) 186 WP_038994143.1 Trm112 family protein -
  LOY45_RS18980 (LOY45_18940) lpxK 4151372..4152382 (-) 1011 WP_115085914.1 tetraacyldisaccharide 4'-kinase -
  LOY45_RS18985 (LOY45_18945) - 4152382..4152813 (-) 432 WP_010223210.1 ExbD/TolR family protein -
  LOY45_RS18990 (LOY45_18950) exbB 4152810..4153445 (-) 636 WP_166675661.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LOY45_RS18995 (LOY45_18955) comA 4153516..4155738 (-) 2223 WP_258578172.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LOY45_RS19000 (LOY45_18960) - 4155882..4156424 (+) 543 WP_115085911.1 DUF2062 domain-containing protein -
  LOY45_RS19005 (LOY45_18965) - 4156392..4157171 (-) 780 WP_115085910.1 ABC transporter permease -
  LOY45_RS19010 (LOY45_18970) - 4157168..4158100 (-) 933 WP_115085909.1 ABC transporter ATP-binding protein -
  LOY45_RS19015 (LOY45_18975) - 4158240..4158863 (-) 624 WP_115085908.1 glutathione S-transferase family protein -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 81031.20 Da        Isoelectric Point: 10.5461

>NTDB_id=627739 LOY45_RS18995 WP_258578172.1 4153516..4155738(-) (comA) [Pseudomonas wadenswilerensis strain B21-022]
MRTGMLALALGLISLGFLPVLPSVWTLVLLTFIGLSSLPSRLWPIGLFLLGLSWACVSAQLALDERLAPQLDGRTLWIEG
RVTGLPEQGARSVRFELSDAESRRGQLPPRLQLSWFGGPAVNSGEYWRLAVSLKRPSGLLNPHGPDQEASLLARRIGATG
SVKAGERLLPATAAWRDGLRQRLLAVDAQGREATLVALILGDGGGLARQDWQVLQATGTVHLLVISGQHVGLLAGLVYAL
IAGLARLGWWPQRLPWLPWACALAFAAALAYGLLAGFQVPVQRACMMLAMVLLWRLRFRHLGVGLPLLLALNAVLLWEPL
ASLQPGFWLSFMAVAILIFTFSGRLGAWNPWLAWSRAQWLIAIGLLPVLLAQGLPVSLTAPLINLLAVPWISLAVLPLAL
LGTLLLPVRYLGEGLLWLAGGVLDGLFRLLAEVALWRPAWLPQPLPFWAWLLVCLGAFLLLLPRGLPMRVLGWPLLLLAV
FAPRERVPVGQVEVWQLDVGQGLAFVLRTRHHAMLYDAGPAMGDFDLGERVVLPSLRKLGVRKLDLMLLSHADADHAGGA
RAVQRGLPVLRVLGGEAAALPEVLKAQPCSSGEHWQWDGVGFSLWQWHEAGDSNQDSCVLLVEAQGEKLLLTGDLDARGE
RAWARDWQAGRIDWLQSPHHGSRSSSSEALLKATAPRGVLISRGRYNAFGHPHREVMARYRTHGIQAYDNVEHGALRLQL
GVFGEPQGLRAQRRFWREPR

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=627739 LOY45_RS18995 WP_258578172.1 4153516..4155738(-) (comA) [Pseudomonas wadenswilerensis strain B21-022]
ATGCGCACAGGGATGTTGGCGCTTGCACTCGGGCTGATCAGTCTCGGGTTCCTACCGGTCTTGCCGTCCGTCTGGACACT
TGTCCTGCTGACATTTATCGGGCTTTCCAGTCTGCCTTCAAGGCTCTGGCCAATCGGGCTGTTTCTGTTGGGACTGAGCT
GGGCCTGTGTCTCGGCGCAATTGGCGCTGGATGAGCGCCTGGCGCCGCAGCTCGATGGCCGTACCCTGTGGATAGAAGGC
CGGGTCACCGGCTTGCCGGAGCAGGGGGCGCGCTCGGTGCGGTTCGAGTTGAGCGACGCCGAGTCGCGTCGCGGACAATT
GCCGCCACGGCTGCAGCTCAGCTGGTTCGGTGGGCCAGCGGTCAACAGCGGTGAATATTGGCGATTGGCCGTCAGCCTCA
AACGCCCCTCTGGCTTGCTCAATCCTCACGGCCCGGATCAGGAAGCCAGCCTGTTGGCGCGACGTATCGGCGCGACCGGT
AGTGTCAAGGCCGGGGAACGTCTGCTGCCAGCGACGGCGGCATGGCGTGATGGCCTGCGCCAGCGCTTGCTGGCGGTCGA
TGCCCAGGGCCGAGAGGCGACGCTGGTGGCGTTGATTCTGGGCGATGGTGGCGGGTTGGCGCGGCAAGACTGGCAAGTGC
TGCAGGCTACCGGCACGGTGCACTTGCTGGTGATATCTGGTCAGCACGTGGGCCTGCTGGCCGGGCTGGTGTACGCCTTG
ATTGCCGGGCTTGCGCGCCTGGGCTGGTGGCCGCAAAGGCTGCCCTGGCTGCCTTGGGCGTGCGCGCTGGCATTTGCCGC
GGCGCTGGCCTACGGCTTGCTGGCCGGTTTTCAGGTGCCGGTGCAGCGGGCGTGCATGATGCTAGCCATGGTGCTGCTCT
GGCGCCTGCGTTTTCGCCACCTGGGCGTTGGCTTACCGCTGTTGCTGGCGCTGAATGCGGTGCTGCTGTGGGAGCCACTG
GCCAGCTTGCAGCCAGGTTTCTGGCTGTCATTCATGGCCGTGGCCATTCTGATCTTCACCTTCAGCGGCCGCCTTGGCGC
CTGGAACCCCTGGCTGGCCTGGAGTCGCGCCCAGTGGTTGATCGCCATCGGCTTGTTGCCGGTGTTGCTGGCGCAAGGTT
TGCCGGTGAGCCTGACGGCACCACTGATCAACCTGCTGGCAGTACCGTGGATCAGTCTTGCTGTCTTGCCCTTGGCGTTG
CTCGGCACCCTGTTGCTGCCCGTGCGGTATCTGGGGGAGGGGCTGCTATGGCTGGCTGGTGGTGTGCTCGATGGCTTGTT
CCGCTTGCTGGCTGAAGTCGCTTTATGGCGACCGGCATGGCTACCTCAACCGCTGCCTTTCTGGGCCTGGTTATTGGTGT
GCCTGGGGGCGTTCCTGCTGCTGTTACCGCGCGGCTTGCCTATGCGGGTGCTCGGCTGGCCATTGCTACTGCTGGCAGTG
TTTGCGCCGAGAGAGCGCGTGCCGGTGGGGCAGGTCGAGGTTTGGCAGCTGGATGTCGGCCAGGGGCTGGCTTTTGTTTT
GCGCACCCGTCACCACGCCATGCTCTATGACGCGGGCCCCGCCATGGGCGATTTCGATCTGGGTGAGAGGGTGGTGTTGC
CCAGCTTGCGCAAGCTGGGTGTGCGCAAGCTTGACCTGATGTTGCTCAGTCATGCTGACGCCGACCATGCCGGTGGTGCC
CGCGCCGTGCAACGCGGCTTGCCGGTGTTGCGGGTGCTTGGCGGGGAAGCCGCGGCCTTGCCTGAGGTGCTGAAGGCGCA
GCCTTGCAGCAGTGGCGAACACTGGCAGTGGGACGGGGTGGGTTTTTCCCTCTGGCAATGGCATGAGGCTGGCGACAGCA
ACCAGGATTCCTGTGTGCTGCTGGTCGAGGCGCAAGGCGAGAAGCTGCTGCTGACCGGCGATCTCGATGCCCGTGGCGAG
CGGGCGTGGGCGCGGGACTGGCAGGCGGGCCGGATCGACTGGCTGCAATCGCCCCATCACGGCAGTCGCAGCTCATCCAG
CGAGGCCTTGTTGAAGGCGACTGCGCCGCGTGGCGTGCTGATCTCCCGCGGGCGTTACAACGCCTTCGGTCACCCTCACC
GGGAGGTGATGGCACGCTACCGGACGCACGGTATCCAGGCCTACGACAATGTCGAGCACGGTGCGCTGCGCCTGCAACTG
GGGGTGTTCGGCGAGCCGCAGGGCCTGCGCGCACAACGGCGTTTCTGGCGCGAACCGAGATGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-678)

Domain of unknown function (DUF4131) (DUF4131)

(21-167)

Competence protein (Competence)

(198-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

61.335

97.162

0.596
  comA Ralstonia pseudosolanacearum GMI1000

33.254

100

0.38