Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LOY45_RS18990 Genome accession   NZ_CP087191
Coordinates   4152810..4153445 (-) Length   211 a.a.
NCBI ID   WP_166675661.1    Uniprot ID   -
Organism   Pseudomonas wadenswilerensis strain B21-022     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4147810..4158445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY45_RS18960 (LOY45_18920) murB 4148907..4149926 (-) 1020 WP_258578171.1 UDP-N-acetylmuramate dehydrogenase -
  LOY45_RS18965 (LOY45_18925) - 4149923..4150387 (-) 465 WP_115085916.1 low molecular weight protein-tyrosine-phosphatase -
  LOY45_RS18970 (LOY45_18930) kdsB 4150387..4151151 (-) 765 WP_115085915.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LOY45_RS18975 (LOY45_18935) - 4151148..4151333 (-) 186 WP_038994143.1 Trm112 family protein -
  LOY45_RS18980 (LOY45_18940) lpxK 4151372..4152382 (-) 1011 WP_115085914.1 tetraacyldisaccharide 4'-kinase -
  LOY45_RS18985 (LOY45_18945) - 4152382..4152813 (-) 432 WP_010223210.1 ExbD/TolR family protein -
  LOY45_RS18990 (LOY45_18950) exbB 4152810..4153445 (-) 636 WP_166675661.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LOY45_RS18995 (LOY45_18955) comA 4153516..4155738 (-) 2223 WP_258578172.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LOY45_RS19000 (LOY45_18960) - 4155882..4156424 (+) 543 WP_115085911.1 DUF2062 domain-containing protein -
  LOY45_RS19005 (LOY45_18965) - 4156392..4157171 (-) 780 WP_115085910.1 ABC transporter permease -
  LOY45_RS19010 (LOY45_18970) - 4157168..4158100 (-) 933 WP_115085909.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22830.04 Da        Isoelectric Point: 6.8759

>NTDB_id=627738 LOY45_RS18990 WP_166675661.1 4152810..4153445(-) (exbB) [Pseudomonas wadenswilerensis strain B21-022]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFMGTGMSTNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=627738 LOY45_RS18990 WP_166675661.1 4152810..4153445(-) (exbB) [Pseudomonas wadenswilerensis strain B21-022]
GTGTGGGAATTGGTCAAGTCCGGTGGCTGGATGATGCTGCCGATCATTCTGAGCTCCATCGCTGCCATGGCGATCGTCGC
CGAGCGTCTCTGGACCTTGCGCGCCAGCCGGGTCACGCCACCGCACCTGCTTGGCCAGGTGTGGATGTGGATCAAGGACA
AACAGCTCACCAGTGACAAACTCAAGGCCCTGCGCGCCGACTCGCCGCTGGGTGAGATCCTTGCCGCGGGCCTGGCCAAC
TCACGCCATGGCCGCGAAATCATGAAGGAATGCATCGAAGAGGCCGCCGCCCGGGTCATCCACGAACTGGAACGCTACAT
CAATGCCCTGGGCACCATCGCTGCCATGGCGCCGCTGCTCGGCCTGCTCGGCACCGTGCTGGGCATGATCGATATCTTCA
GTGCCTTCATGGGCACCGGCATGTCCACCAACGCCGCAGTACTGGCCGGTGGTATCTCCAAGGCGCTGATCACCACGGCA
GCCGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGTTTCCTGCAACGCCGTATCGATGAGCTGGTGGTTGGCAT
GGAGCAGGAAGCGATCAAGCTGGTCGAAGTGGTGCAGGGCGACCGCGATGTCGACCTGGCCGAGGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.782

100

0.858