Detailed information NTG0627692

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: LOY29_RS26945
• Genome accession: NZ_CP087189
• Coordinates: 5924506..5925840 (+)
• Length: 444 a.a.
• NCBI ID: WP_072453007.1
• Uniprot ID: -
• Organism: Pseudomonas protegens strain B21-024
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5919506..5930840

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LOY29_RS26925 (LOY29_26870)	pgeF	5920862..5921587 (-)	726	WP_093409813.1	peptidoglycan editing factor PgeF	-
LOY29_RS26930 (LOY29_26875)	rluD	5921584..5922546 (-)	963	WP_011063535.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
LOY29_RS26935 (LOY29_26880)	-	5922697..5923722 (+)	1026	WP_011063536.1	outer membrane protein assembly factor BamD	-
LOY29_RS26940 (LOY29_26885)	-	5923847..5924080 (+)	234	WP_015637081.1	PP0621 family protein	-
LOY29_RS26945 (LOY29_26890)	pilR	5924506..5925840 (+)	1335	WP_072453007.1	sigma-54 dependent transcriptional regulator	Regulator
LOY29_RS26950 (LOY29_26895)	thiO	5925837..5926937 (-)	1101	WP_258611191.1	glycine oxidase ThiO	-
LOY29_RS26955 (LOY29_26900)	-	5926991..5927392 (-)	402	WP_015637084.1	type IV pilin protein	-
LOY29_RS26960 (LOY29_26905)	-	5927408..5930470 (-)	3063	WP_258611192.1	pilus assembly protein	-

Sequence

Protein

• Length: 444 a.a.
• Molecular weight: 49217.46 Da
• Isoelectric Point: 8.8679

>NTDB_id=627692 LOY29_RS26945 WP_072453007.1 5924506..5925840(+) (pilR) [Pseudomonas protegens strain B21-024]
MNPRQSVLVVDDATETRALVEITLGRMRLHTQSARTLQEARGRLARERFDLCLTDLQLPDGSGLELLRHIRQSHPNLPVA
LLSNGACAQASAGALQAGACQLLHKPLDLKQLRAWVGASLKQATDCATDDPARQLLGDSAPMNALRRHIDKLAHSLAAVY
ISGESGSGKERVARLLHQLGPRARYPFVPVNCGAIPSELMESELFGHCKGSFSGAVSDQPGLFLAAHGGTLFLDEVADLP
LAMQVKLLRALQEKSVRPVGSQQEKTVDVRILCATHKDLKNEVETGRFRQDLYYRLNVIELRVPALRERRGDIPALAGHV
LQRLARDSGQPAVQLRPEALQALERYDFPGNVRELENLLERAQTLCEGRWIETDDLQLPRAGSLEARSSAAATQLDLALH
LQQVERQLLLQALEETRWNRTAAARRLSLSFRSMRYRMKKLGLD

Nucleotide

• Length: 1335 bp

>NTDB_id=627692 LOY29_RS26945 WP_072453007.1 5924506..5925840(+) (pilR) [Pseudomonas protegens strain B21-024]
ATGAACCCACGGCAATCGGTGCTGGTGGTCGATGACGCCACGGAAACCCGCGCCCTTGTGGAGATCACTCTGGGCCGAAT
GCGCTTGCACACCCAAAGTGCGCGCACCCTGCAGGAAGCCCGTGGCCGCCTGGCCCGGGAGCGCTTTGACCTGTGCCTGA
CCGACCTGCAGCTACCGGACGGCAGCGGGCTGGAGCTGCTGCGGCACATCCGCCAGTCCCACCCCAACCTTCCTGTGGCG
CTGCTAAGCAACGGCGCCTGTGCACAGGCCAGCGCGGGCGCCCTGCAGGCCGGAGCCTGCCAGTTGCTGCACAAGCCTCT
GGACCTCAAGCAACTGCGCGCTTGGGTAGGTGCCAGCCTGAAGCAGGCCACGGACTGCGCAACGGATGACCCAGCCCGGC
AATTGCTGGGAGACTCGGCGCCCATGAATGCCCTGCGTCGCCACATCGACAAGCTGGCCCACAGCCTGGCGGCGGTCTAT
ATCAGCGGTGAATCCGGCAGTGGCAAGGAACGGGTCGCCCGTCTGCTCCACCAGCTTGGCCCCAGGGCCCGATACCCGTT
CGTCCCGGTCAACTGCGGGGCGATTCCTTCCGAATTGATGGAGAGTGAACTCTTCGGCCATTGCAAAGGCAGCTTCAGTG
GCGCCGTCAGCGATCAGCCCGGGTTATTTCTGGCCGCCCACGGCGGCACCCTGTTTCTTGATGAGGTCGCCGACCTGCCC
CTGGCCATGCAAGTAAAACTGCTGCGAGCCTTGCAGGAAAAATCCGTGCGCCCTGTAGGCAGCCAACAGGAAAAAACCGT
CGACGTGCGGATTCTCTGTGCCACCCACAAGGACCTGAAAAACGAGGTAGAGACCGGACGCTTTCGCCAGGACCTCTACT
ACCGCCTGAACGTCATCGAGTTGCGAGTCCCTGCGTTGCGCGAGCGCCGTGGCGACATCCCCGCACTGGCCGGGCACGTC
CTGCAGCGTCTGGCCAGGGACAGCGGACAGCCTGCCGTCCAGCTACGTCCCGAAGCCCTGCAAGCCCTGGAGCGCTATGA
CTTTCCGGGCAACGTGCGAGAGCTGGAAAACCTGCTGGAACGGGCGCAGACCCTATGCGAAGGACGCTGGATAGAAACAG
ACGACCTGCAGTTGCCCAGAGCCGGCAGCCTTGAAGCCCGATCATCGGCGGCGGCTACCCAGCTAGACCTGGCGCTGCAC
CTGCAACAGGTGGAGCGCCAGTTGCTGCTCCAGGCCCTGGAGGAAACCCGCTGGAACCGCACGGCGGCGGCCCGGCGGCT
GAGCCTGTCGTTTCGTTCGATGCGTTACCGCATGAAGAAGCTCGGGCTGGACTAG

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-114)

• Bacterial regulatory protein, Fis family (HTH_8) (401-441)

• Sigma-54 interaction domain (Sigma54_activat) (136-301)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	63.205	99.775	0.631
pilR	Acinetobacter baumannii strain A118	45.534	100	0.471
luxO	Vibrio cholerae strain A1552	37.182	97.523	0.363