Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   LOY41_RS22725 Genome accession   NZ_CP087187
Coordinates   5055543..5056889 (+) Length   448 a.a.
NCBI ID   WP_122706064.1    Uniprot ID   -
Organism   Pseudomonas atacamensis strain B21-026     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5050543..5061889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY41_RS22700 (LOY41_22665) pgeF 5050758..5051480 (-) 723 WP_122706070.1 peptidoglycan editing factor PgeF -
  LOY41_RS22705 (LOY41_22670) rluD 5051477..5052439 (-) 963 WP_042610487.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LOY41_RS22710 (LOY41_22675) - 5052591..5053607 (+) 1017 WP_056790462.1 outer membrane protein assembly factor BamD -
  LOY41_RS22715 (LOY41_22680) - 5053734..5053967 (+) 234 WP_122706068.1 PP0621 family protein -
  LOY41_RS22720 (LOY41_22685) pilS 5053957..5055546 (+) 1590 WP_258717373.1 PAS domain-containing sensor histidine kinase Regulator
  LOY41_RS22725 (LOY41_22690) pilR 5055543..5056889 (+) 1347 WP_122706064.1 sigma-54 dependent transcriptional regulator Regulator
  LOY41_RS22730 (LOY41_22695) thiO 5056982..5058082 (-) 1101 WP_122706062.1 glycine oxidase ThiO -
  LOY41_RS22735 (LOY41_22700) - 5058139..5058540 (-) 402 WP_122706060.1 type IV pilin protein -
  LOY41_RS22740 (LOY41_22705) - 5058556..5061645 (-) 3090 WP_122706058.1 pilus assembly protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 50218.53 Da        Isoelectric Point: 6.5118

>NTDB_id=627642 LOY41_RS22725 WP_122706064.1 5055543..5056889(+) (pilR) [Pseudomonas atacamensis strain B21-026]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLETFSARNLGEAQALLQREHFDLCLTDMRLPDGTGLELVQHIQQRAPHLP
VAMITAYGSLETAINALKAGAFDFLTKPVELPRLRELVSSALRLPTAGGPSTAIERRLLGDSPPMANLRRQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRASQPFVPVNCGAIPSELMESEFFGHRKGSFTGAVEDKPGLFQAAHGGTLFLDEVA
DLPLSMQVKLLRAIQEKAVRSVGGQQETVVDVRILCATHKDLEAEVSAERFRQDLYYRLNVIELRVPSLRERRDDIEALA
MHVLKRLAKDTGQPEARLHPQALETLKNYRFPGNVRELENVLERAHTLCENRTIEAQDLRLSEGNCTADGTMADLTQIDN
LEEYLESVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=627642 LOY41_RS22725 WP_122706064.1 5055543..5056889(+) (pilR) [Pseudomonas atacamensis strain B21-026]
TTGAATACAAGCCCACGGCAAAAAATTCTAATCGTCGACGACGAACCGGATATCCGCGAGCTCCTGGAAATCACCCTGGG
ACGGATGAAACTCGAGACCTTCAGCGCACGCAATCTGGGCGAAGCTCAGGCGCTGTTGCAGCGCGAGCACTTTGACCTGT
GCCTGACCGACATGCGCCTGCCCGACGGCACCGGGCTGGAGCTGGTGCAACACATTCAGCAACGCGCTCCACACCTGCCG
GTGGCGATGATCACGGCGTACGGAAGCCTGGAAACTGCGATCAATGCGCTGAAGGCCGGGGCGTTCGATTTCCTCACCAA
ACCGGTGGAACTGCCGCGCTTGCGCGAACTGGTCAGCTCGGCGCTACGCCTGCCGACAGCGGGTGGCCCGAGCACCGCAA
TCGAGCGACGCTTGCTGGGCGATTCGCCGCCAATGGCCAATCTGCGCAGGCAGATCGACAAGCTCGCACGCAGTCAGGCA
CCGGTCTACATCAGCGGCGAATCCGGCAGCGGCAAAGAACTGGTCGCGCGTCTGATCCACGAACAAGGTCCGCGCGCCAG
CCAGCCGTTTGTGCCGGTGAACTGCGGGGCAATTCCATCGGAACTGATGGAAAGCGAATTTTTCGGCCACCGCAAAGGCA
GTTTCACTGGAGCCGTCGAAGACAAGCCGGGGCTGTTTCAAGCGGCCCATGGCGGCACTCTGTTTCTCGATGAAGTCGCC
GATTTGCCACTGTCGATGCAAGTGAAACTGCTGCGGGCGATTCAGGAAAAAGCCGTGCGCAGCGTCGGCGGCCAGCAGGA
AACGGTGGTGGACGTGCGCATCCTTTGCGCAACGCACAAAGACCTTGAAGCCGAAGTTTCGGCCGAACGCTTCCGCCAGG
ATCTGTATTACCGGCTCAACGTCATCGAACTGCGTGTGCCGTCCCTGCGCGAACGCCGCGACGACATTGAGGCGCTTGCC
ATGCACGTACTCAAGCGCCTGGCCAAAGACACCGGACAACCCGAAGCACGCCTGCATCCGCAAGCGCTGGAGACGCTGAA
GAACTATCGCTTTCCCGGCAATGTGCGCGAACTGGAGAATGTTCTCGAACGCGCGCACACCCTGTGTGAAAACCGCACGA
TCGAAGCGCAGGATCTGCGTTTGAGCGAAGGCAATTGCACGGCGGACGGGACGATGGCCGATCTGACGCAGATCGACAAT
CTTGAGGAGTATCTGGAGAGCGTCGAGAGGAAGCTGATTTTGCAGGCGCTGGAGGAAACCCGCTGGAACCGCACGGCGGC
GGCGCAGCGGTTGAGTCTGTCGTTTCGGTCAATGCGCTATCGGCTGAAGAAGTTGGGCCTGGATTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-118)

Sigma-54 interaction domain (Sigma54_activat)

(139-304)

Bacterial regulatory protein, Fis family (HTH_8)

(405-445)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

78.104

98.884

0.772
  pilR Acinetobacter baumannii strain A118

49.02

100

0.502