Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   LOY41_RS22720 Genome accession   NZ_CP087187
Coordinates   5053957..5055546 (+) Length   529 a.a.
NCBI ID   WP_258717373.1    Uniprot ID   -
Organism   Pseudomonas atacamensis strain B21-026     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5048957..5060546
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY41_RS22700 (LOY41_22665) pgeF 5050758..5051480 (-) 723 WP_122706070.1 peptidoglycan editing factor PgeF -
  LOY41_RS22705 (LOY41_22670) rluD 5051477..5052439 (-) 963 WP_042610487.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LOY41_RS22710 (LOY41_22675) - 5052591..5053607 (+) 1017 WP_056790462.1 outer membrane protein assembly factor BamD -
  LOY41_RS22715 (LOY41_22680) - 5053734..5053967 (+) 234 WP_122706068.1 PP0621 family protein -
  LOY41_RS22720 (LOY41_22685) pilS 5053957..5055546 (+) 1590 WP_258717373.1 PAS domain-containing sensor histidine kinase Regulator
  LOY41_RS22725 (LOY41_22690) pilR 5055543..5056889 (+) 1347 WP_122706064.1 sigma-54 dependent transcriptional regulator Regulator
  LOY41_RS22730 (LOY41_22695) thiO 5056982..5058082 (-) 1101 WP_122706062.1 glycine oxidase ThiO -
  LOY41_RS22735 (LOY41_22700) - 5058139..5058540 (-) 402 WP_122706060.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58635.33 Da        Isoelectric Point: 6.9654

>NTDB_id=627641 LOY41_RS22720 WP_258717373.1 5053957..5055546(+) (pilS) [Pseudomonas atacamensis strain B21-026]
MVAEAANADQKQAQRLLRLYHLYRLSVGITLVLLISSNMDNRLLTSANDDLLRGGSWLYLIINMLLVVFLENTRRPAQLF
TLALVDVLLLCGLFYAAGGVASALGNLLVVSVAISNTLLRRRIGLLIAAIAAIGIVGLSFLLGLSRPLSANAYLQAGTLG
ALCFAASLLVQGLIRRLEVSETLAEQRASEVVSLEALNALILQRMRTGILVLDEQRRVQLANHSAQSLLGHSRLQGHLID
EYSPALVERLQLWRNNPTLRPQSLKIPGNGLELQPSFIALEQSPNQQTLVFLEDLAQITQQAQQLKLAALGRLTAGISHE
IRNPLGAISHAAQLLAESEELDSADRRLTQIIQDHSQRMNRVIENVLQLSRRQQSAPQRLDLKPWLEEFVGETREQANER
QHIHLRINSGDFTTLMDPNQLRQILDNLIRNAWRHSAQMHEQADVWLALFVDPDSQLAVLEVQDNGPGVSADEQAHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKSRQGGGCFCITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=627641 LOY41_RS22720 WP_258717373.1 5053957..5055546(+) (pilS) [Pseudomonas atacamensis strain B21-026]
GTGGTCGCTGAGGCCGCTAACGCCGACCAGAAACAGGCGCAGCGTCTGCTGCGCCTTTATCACCTGTACCGTTTAAGTGT
CGGCATCACTCTGGTGTTGCTGATCTCCAGCAACATGGACAACCGCCTGCTGACGTCGGCCAACGACGATCTGCTGCGCG
GCGGCAGCTGGCTGTACCTGATCATCAATATGCTGCTGGTGGTGTTCCTCGAAAACACCCGGCGCCCGGCGCAGTTGTTC
ACCCTGGCCCTCGTCGACGTGCTGCTGTTGTGCGGCCTGTTCTACGCGGCCGGCGGCGTGGCCAGTGCGCTGGGCAATCT
GCTGGTGGTCTCGGTGGCAATCAGCAACACCCTGCTGCGCCGACGCATCGGCCTGCTGATTGCCGCCATTGCGGCGATCG
GCATTGTCGGCCTGAGCTTTCTGCTGGGTCTCAGCCGCCCCTTGAGCGCCAACGCCTACTTGCAAGCCGGCACCCTCGGT
GCGCTGTGCTTTGCCGCATCGCTGCTGGTGCAAGGGTTGATCCGCCGCCTCGAAGTCAGCGAGACCCTGGCCGAACAGCG
CGCCAGCGAAGTGGTCAGCCTGGAGGCGCTGAACGCGTTGATCCTGCAACGCATGCGCACGGGGATTCTCGTGCTCGACG
AGCAACGTCGGGTGCAACTGGCCAATCACAGCGCGCAGAGTCTGCTCGGCCATAGTCGCCTGCAAGGTCATTTGATCGAC
GAGTATTCCCCCGCATTGGTCGAGCGTCTGCAACTGTGGCGCAACAACCCGACCTTGCGCCCGCAGAGCCTGAAAATCCC
CGGCAATGGCCTTGAGCTGCAGCCCAGTTTCATCGCCCTTGAGCAGAGCCCGAACCAGCAGACGCTGGTGTTTCTCGAAG
ACCTGGCGCAAATCACCCAACAGGCGCAGCAACTCAAGCTCGCTGCGCTCGGGCGTTTGACCGCCGGCATCTCCCATGAA
ATTCGCAATCCACTGGGCGCGATCAGTCACGCCGCACAGCTGTTGGCCGAGTCCGAGGAACTCGATAGCGCAGATCGGCG
TCTGACGCAGATTATTCAAGACCACTCCCAGCGCATGAACCGAGTCATCGAAAACGTCCTGCAACTGTCCCGCCGCCAGC
AAAGCGCGCCGCAACGGCTGGACCTCAAGCCGTGGCTGGAAGAATTCGTCGGCGAAACCCGCGAGCAGGCCAATGAGCGC
CAGCACATTCATCTGCGGATCAATTCCGGCGATTTCACCACGCTGATGGACCCGAACCAATTGCGGCAGATTCTCGACAA
TCTGATACGCAACGCCTGGCGTCACAGTGCGCAAATGCACGAGCAGGCCGACGTCTGGCTGGCACTGTTCGTCGACCCGG
ACAGCCAGTTGGCGGTGCTTGAGGTCCAGGACAACGGCCCCGGCGTGTCGGCCGATGAACAGGCGCATCTCTTTGAACCC
TTCTTCACTACCAGCAGCCAGGGCACCGGTCTTGGCCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCACGCCT
AGACTTCAAATCACGCCAAGGCGGCGGCTGCTTTTGCATCACTTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

59.623

100

0.597