Detailed information NTG0627634

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: LOY41_RS19390
• Genome accession: NZ_CP087187
• Coordinates: 4324812..4327046 (-)
• Length: 744 a.a.
• NCBI ID: WP_122707426.1
• Uniprot ID: -
• Organism: Pseudomonas atacamensis strain B21-026
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4319812..4332046

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LOY41_RS19355 (LOY41_19320)	murB	4320190..4321209 (-)	1020	WP_122707420.1	UDP-N-acetylmuramate dehydrogenase	-
LOY41_RS19360 (LOY41_19325)	-	4321206..4321670 (-)	465	WP_073472251.1	low molecular weight protein-tyrosine-phosphatase	-
LOY41_RS19365 (LOY41_19330)	kdsB	4321670..4322434 (-)	765	WP_073472249.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
LOY41_RS19370 (LOY41_19335)	-	4322431..4322616 (-)	186	WP_003179363.1	Trm112 family protein	-
LOY41_RS19375 (LOY41_19340)	lpxK	4322640..4323650 (-)	1011	WP_122707422.1	tetraacyldisaccharide 4'-kinase	-
LOY41_RS19380 (LOY41_19345)	-	4323650..4324078 (-)	429	WP_016771006.1	biopolymer transporter ExbD	-
LOY41_RS19385 (LOY41_19350)	exbB	4324075..4324710 (-)	636	WP_016771007.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
LOY41_RS19390 (LOY41_19355)	comA	4324812..4327046 (-)	2235	WP_122707426.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
LOY41_RS19395 (LOY41_19360)	-	4327183..4327701 (+)	519	WP_016770668.1	DUF2062 domain-containing protein	-
LOY41_RS19400 (LOY41_19365)	-	4327841..4328620 (-)	780	WP_056788203.1	ABC transporter permease	-
LOY41_RS19405 (LOY41_19370)	-	4328617..4329549 (-)	933	WP_016771010.1	ABC transporter ATP-binding protein	-
LOY41_RS19410 (LOY41_19375)	-	4329683..4330306 (-)	624	WP_024013937.1	glutathione S-transferase family protein	-
LOY41_RS19415 (LOY41_19380)	-	4330350..4331009 (-)	660	WP_110645984.1	transglutaminase family protein	-

Sequence

Protein

• Length: 744 a.a.
• Molecular weight: 81768.84 Da
• Isoelectric Point: 9.7676

>NTDB_id=627634 LOY41_RS19390 WP_122707426.1 4324812..4327046(-) (comA) [Pseudomonas atacamensis strain B21-026]
MRTGMMALAVGLLAPVFLPALPPVGWLLVLPMVALMLLPFRSFPLAFLLFGFTWACVGAQWALNDRLPPSLDGETRWLEG
RVVGLPQHSDGVVRFELADARSRHEKLPSLLRLAWYAGPPVNSGERWRLAVKLKRPGGLLNPDAFDYEAWLLAQRIGATG
TIKDGQRLAEARHAWRDGVRQRLLAVDAQGREGALAALVLGDGSGLSREDWQILQDTGTVHLLVISGQHIGLLAAVMYLL
VAGLARFGIWPVRWPWLPWACGLAFAAALGYGLLAGFDVPVQRACVMVALVLLWRLRFRHLGAWWPLLLAFNGVLLLDPL
ASLRPGFWLSFAAVAVLIFTFGGRLGAWRWWQTWTRAQWLIAIGLCPVLLALSLPISVSGPVANLLAVPWVSLVVLPPAL
LGTLLLPVPYVGEGLLWLAGGLIDWLFIGLALIAGQWPAWIPAAIPSWALVLGSLGALLLLLPRGVPLRPLGWPLLLLLA
LPPQERIEEGRADVWQLDVGQGLAILIRTRHHALLYDAGPRFGEFDLGERVVLPALRKLNVQALDLMLLSHADADHAGGA
RAVMRGFNVHRVVSGDPPNLPPELNAEACASGERWQWDGVQFQLWQWSAADDSNQRSCVLQIEANGERLLLTGDIDTHAE
RVLLDSPLAVPTQWLQSPHHGSRSSSSMALLKALQPEAVLISRGHGNSFGHPHPTVLARYRKQGLRIYDSAEHGAIHLQL
GSFKPPWTMRQQRRFWRDPPVAGR

Nucleotide

• Length: 2235 bp

>NTDB_id=627634 LOY41_RS19390 WP_122707426.1 4324812..4327046(-) (comA) [Pseudomonas atacamensis strain B21-026]
ATGCGCACAGGGATGATGGCGCTGGCAGTCGGTCTGCTGGCCCCGGTTTTTTTGCCGGCCTTGCCGCCGGTCGGTTGGTT
GCTGGTGCTGCCAATGGTGGCGCTGATGTTGCTGCCGTTTCGCAGCTTTCCATTGGCGTTTTTGCTGTTTGGCTTTACCT
GGGCCTGCGTTGGCGCGCAGTGGGCGCTAAATGACCGCTTGCCACCGAGCCTCGACGGCGAAACCCGTTGGCTTGAAGGG
CGAGTGGTCGGCTTACCGCAGCACAGCGATGGCGTGGTGCGTTTCGAGCTGGCTGATGCGCGCTCACGCCACGAAAAACT
GCCATCGCTGCTGCGCCTGGCCTGGTACGCCGGGCCGCCGGTCAACAGCGGCGAACGCTGGCGCCTGGCGGTGAAGTTGA
AGCGCCCGGGTGGCCTGCTCAACCCGGACGCCTTCGACTACGAGGCCTGGCTGCTCGCGCAACGGATCGGCGCAACCGGC
ACGATCAAGGATGGCCAGCGCTTGGCTGAGGCCCGGCATGCATGGCGCGACGGCGTTCGCCAACGCCTGCTCGCGGTGGA
TGCGCAAGGACGCGAGGGCGCGCTGGCGGCGCTGGTGCTTGGCGACGGTTCGGGGCTGAGTCGCGAGGACTGGCAGATTC
TGCAAGACACCGGCACCGTGCATTTGCTGGTGATCTCCGGACAGCACATCGGTTTGCTGGCGGCGGTGATGTATCTTCTG
GTCGCCGGGCTGGCGCGTTTCGGAATCTGGCCGGTGCGCTGGCCATGGTTGCCGTGGGCCTGTGGTCTGGCATTCGCGGC
GGCGCTGGGTTACGGCTTGCTCGCCGGTTTCGACGTGCCAGTGCAGCGCGCCTGCGTGATGGTGGCGCTGGTATTGTTGT
GGCGCCTGCGTTTTCGCCATCTCGGCGCGTGGTGGCCGTTATTGCTGGCGTTCAATGGCGTGCTGCTGCTTGATCCACTG
GCCAGTTTGCGTCCCGGCTTCTGGCTGTCTTTCGCGGCGGTGGCAGTGTTGATCTTCACTTTCGGCGGGCGGCTGGGGGC
CTGGCGGTGGTGGCAGACCTGGACCCGCGCGCAGTGGCTGATCGCGATCGGCTTGTGTCCGGTGTTGCTGGCGCTGAGCT
TGCCCATCAGCGTCAGCGGGCCTGTAGCCAATCTGCTGGCCGTTCCGTGGGTCAGCCTCGTGGTGCTGCCGCCGGCATTG
CTCGGCACGCTATTGCTGCCCGTGCCTTATGTTGGCGAAGGGCTGTTGTGGCTGGCCGGTGGTTTGATCGACTGGCTGTT
TATCGGGCTGGCGCTGATTGCCGGGCAATGGCCGGCGTGGATACCTGCCGCCATTCCATCGTGGGCGTTGGTCCTGGGCA
GCCTCGGCGCGTTGTTATTGCTGCTGCCCCGTGGCGTGCCGCTGCGTCCATTGGGCTGGCCGCTGCTGTTGCTCCTGGCA
TTGCCGCCTCAAGAGCGAATAGAAGAAGGGCGGGCCGATGTCTGGCAACTCGACGTCGGCCAAGGCCTGGCCATCCTCAT
CCGCACCCGCCATCACGCGCTTCTCTATGACGCCGGCCCGCGTTTCGGCGAGTTCGATCTCGGCGAGCGGGTGGTGCTGC
CAGCGTTACGTAAACTCAATGTGCAAGCGCTCGATTTGATGCTGCTCAGCCATGCCGACGCCGATCACGCTGGCGGCGCC
CGGGCGGTCATGCGTGGCTTCAACGTGCACCGAGTGGTCAGCGGCGATCCGCCAAACCTGCCGCCGGAGCTGAACGCCGA
AGCCTGCGCGAGTGGCGAACGGTGGCAGTGGGACGGCGTGCAGTTCCAGCTCTGGCAATGGTCGGCAGCCGATGACAGCA
ACCAGCGTTCCTGTGTGTTGCAGATCGAGGCCAACGGCGAACGCCTGCTGCTCACCGGCGACATCGACACTCATGCCGAG
CGCGTCCTGCTCGACAGCCCACTGGCCGTGCCGACGCAGTGGCTGCAATCACCACATCACGGCAGTCGCAGTTCATCATC
GATGGCCCTGCTCAAAGCCTTGCAGCCCGAAGCGGTGCTGATCTCCCGTGGCCACGGCAACTCCTTCGGTCATCCGCATC
CAACCGTGCTGGCGCGCTACCGCAAGCAAGGTCTGCGCATCTACGACAGCGCCGAGCACGGTGCCATTCATCTGCAACTG
GGCAGCTTCAAACCGCCGTGGACGATGCGTCAACAGCGGCGTTTCTGGCGCGATCCGCCGGTGGCTGGCCGTTGA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (198-464)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

• Domain of unknown function (DUF4131) (DUF4131) (20-167)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	63.561	96.64	0.614
comA	Ralstonia pseudosolanacearum GMI1000	35.604	100	0.372