Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LOY41_RS19385 Genome accession   NZ_CP087187
Coordinates   4324075..4324710 (-) Length   211 a.a.
NCBI ID   WP_016771007.1    Uniprot ID   A0AAU7ERB8
Organism   Pseudomonas atacamensis strain B21-026     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4319075..4329710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY41_RS19350 (LOY41_19315) - 4319470..4319940 (-) 471 WP_073472255.1 (2Fe-2S)-binding protein -
  LOY41_RS19355 (LOY41_19320) murB 4320190..4321209 (-) 1020 WP_122707420.1 UDP-N-acetylmuramate dehydrogenase -
  LOY41_RS19360 (LOY41_19325) - 4321206..4321670 (-) 465 WP_073472251.1 low molecular weight protein-tyrosine-phosphatase -
  LOY41_RS19365 (LOY41_19330) kdsB 4321670..4322434 (-) 765 WP_073472249.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LOY41_RS19370 (LOY41_19335) - 4322431..4322616 (-) 186 WP_003179363.1 Trm112 family protein -
  LOY41_RS19375 (LOY41_19340) lpxK 4322640..4323650 (-) 1011 WP_122707422.1 tetraacyldisaccharide 4'-kinase -
  LOY41_RS19380 (LOY41_19345) - 4323650..4324078 (-) 429 WP_016771006.1 biopolymer transporter ExbD -
  LOY41_RS19385 (LOY41_19350) exbB 4324075..4324710 (-) 636 WP_016771007.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LOY41_RS19390 (LOY41_19355) comA 4324812..4327046 (-) 2235 WP_122707426.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LOY41_RS19395 (LOY41_19360) - 4327183..4327701 (+) 519 WP_016770668.1 DUF2062 domain-containing protein -
  LOY41_RS19400 (LOY41_19365) - 4327841..4328620 (-) 780 WP_056788203.1 ABC transporter permease -
  LOY41_RS19405 (LOY41_19370) - 4328617..4329549 (-) 933 WP_016771010.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22913.06 Da        Isoelectric Point: 6.8770

>NTDB_id=627633 LOY41_RS19385 WP_016771007.1 4324075..4324710(-) (exbB) [Pseudomonas atacamensis strain B21-026]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=627633 LOY41_RS19385 WP_016771007.1 4324075..4324710(-) (exbB) [Pseudomonas atacamensis strain B21-026]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCCATGGCGATTGTTGC
CGAGCGCCTGTGGACACTGCGCGCCAGTCGCGTCACCCCCGAGCATCTGCTGGGTCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTCAACAAGGAAAAACTCAAGGAATTGCGCGCCAATTCGCCGCTGGGGGAAATTCTCGCCGCAGGCCTGGCCAAT
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCCGCGCGGGTCATTCATGAACTCGAACGCTACAT
CAACGCACTCGGCACCATCGCCGCCATGGCGCCGCTGCTCGGCCTGCTCGGCACCGTGTTGGGCATGATCGACATTTTCA
GTGCCTTCACCGGCTCCGGCATGACTACCAATGCTTCGGTACTGGCCGGCGGTATTTCCAAAGCGCTGATCACGACCGCA
GCGGGCCTGATGGTCGGGATTCCAGCGGTGTTCTTCCACCGGTTTTTGCAGCGCCGCATCGACGAGCTGGTGGTGGGTAT
GGAGCAGGAAGCGATCAAACTGGTGGAAGTGGTGCAGGGCGACCGTGATGTCGATCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.782

100

0.858