Detailed information NTG0627612

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: LOY48_RS22140
• Genome accession: NZ_CP087186
• Coordinates: 5026201..5027547 (+)
• Length: 448 a.a.
• NCBI ID: WP_252878915.1
• Uniprot ID: -
• Organism: Pseudomonas siliginis strain B21-063
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5021201..5032547

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LOY48_RS22115 (LOY48_22080)	pgeF	5021415..5022137 (-)	723	WP_150638502.1	peptidoglycan editing factor PgeF	-
LOY48_RS22120 (LOY48_22085)	rluD	5022134..5023096 (-)	963	WP_016773140.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
LOY48_RS22125 (LOY48_22090)	-	5023248..5024264 (+)	1017	WP_056790462.1	outer membrane protein assembly factor BamD	-
LOY48_RS22130 (LOY48_22095)	-	5024392..5024625 (+)	234	WP_258707213.1	PP0621 family protein	-
LOY48_RS22135 (LOY48_22100)	pilS	5024615..5026204 (+)	1590	WP_150742245.1	PAS domain-containing sensor histidine kinase	Regulator
LOY48_RS22140 (LOY48_22105)	pilR	5026201..5027547 (+)	1347	WP_252878915.1	sigma-54 dependent transcriptional regulator	Regulator
LOY48_RS22145 (LOY48_22110)	thiO	5027640..5028740 (-)	1101	WP_252882702.1	glycine oxidase ThiO	-
LOY48_RS22150 (LOY48_22115)	-	5028798..5029199 (-)	402	WP_252868305.1	type IV pilin protein	-
LOY48_RS22155 (LOY48_22120)	-	5029215..5032304 (-)	3090	WP_258707214.1	pilus assembly protein	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 50193.47 Da
• Isoelectric Point: 6.3600

>NTDB_id=627612 LOY48_RS22140 WP_252878915.1 5026201..5027547(+) (pilR) [Pseudomonas siliginis strain B21-063]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLETFSARNLGEAQALLQREHFDLCLTDMRLPDGTGLELVQHIQQRDPHLP
VAMITAYGSLETAINALKAGAFDFLTKPVELPRLRELVSSALRLPTAGGLSTAIERRLLGDSQPMANLRKQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRASQPFVPVNCGAIPSELMESEFFGHRKGSFTGAVEDKPGLFQAAHGGTLFLDEVA
DLPLSMQVKLLRAIQEKAVRSVGGQQETVVDVRILCATHKDLEAEVSAERFRQDLYYRLNVIELRVPSLRERRDDIEALA
MHVLKRLAKDTGQPEARLHPQALEALKNYRFPGNVRELENVLERAHTLCENRTIEAQDLRLSEGNCTADGAMADLTQVDN
LEDYLESVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1347 bp

>NTDB_id=627612 LOY48_RS22140 WP_252878915.1 5026201..5027547(+) (pilR) [Pseudomonas siliginis strain B21-063]
TTGAATACAAGCCCACGGCAAAAAATTCTAATCGTCGACGACGAACCGGATATCCGCGAGCTCCTGGAAATCACCCTGGG
ACGGATGAAACTCGAGACCTTCAGCGCACGCAATCTGGGCGAGGCTCAGGCGCTGTTGCAGCGCGAGCACTTTGACCTGT
GCCTGACCGACATGCGCCTGCCCGACGGCACCGGGCTGGAGCTGGTGCAACACATTCAGCAACGCGATCCACACCTGCCG
GTGGCGATGATCACTGCGTACGGAAGCCTGGAAACGGCCATCAATGCATTGAAGGCCGGGGCGTTCGATTTCCTCACCAA
ACCGGTGGAGCTGCCGCGATTGCGCGAACTGGTCAGCTCGGCGCTGCGCCTGCCGACAGCGGGCGGCCTGAGCACGGCAA
TCGAGCGACGGTTGCTGGGTGACTCGCAGCCGATGGCCAATCTGCGCAAGCAGATCGACAAGCTCGCGCGCAGCCAGGCG
CCGGTATACATCAGCGGCGAATCCGGCAGCGGCAAAGAACTGGTCGCGCGTCTGATTCACGAACAAGGCCCGCGCGCCAG
CCAGCCGTTTGTGCCGGTGAACTGCGGGGCAATTCCGTCGGAACTGATGGAAAGCGAATTTTTCGGCCACCGCAAAGGCA
GCTTCACCGGTGCCGTCGAAGACAAGCCGGGGCTATTCCAGGCGGCCCATGGCGGCACTCTGTTTCTCGATGAAGTCGCC
GACCTGCCACTGTCGATGCAAGTGAAGCTGCTGCGGGCGATTCAGGAAAAAGCCGTGCGCAGCGTCGGCGGCCAGCAGGA
AACGGTGGTCGACGTGCGTATCCTTTGCGCCACGCACAAAGACCTTGAAGCCGAAGTTTCGGCCGAACGCTTCCGCCAGG
ATCTGTATTACCGGCTCAACGTCATCGAACTGCGCGTGCCGTCCCTGCGCGAACGCCGCGACGACATCGAGGCGCTTGCC
ATGCACGTGCTCAAGCGCCTGGCCAAAGACACCGGACAACCCGAAGCGCGCCTGCACCCGCAAGCGCTGGAGGCGCTGAA
GAACTATCGCTTTCCCGGCAACGTGCGCGAACTGGAGAATGTTCTCGAACGCGCGCACACCCTGTGTGAAAACCGCACGA
TCGAAGCGCAGGATCTGCGTTTGAGCGAAGGCAATTGCACGGCGGACGGGGCGATGGCCGATCTGACGCAGGTCGACAAT
CTTGAGGATTATCTGGAGAGCGTCGAGAGGAAGCTGATTTTGCAGGCGCTGGAGGAAACCCGCTGGAACCGCACGGCAGC
GGCGCAGCGGTTGAGTCTGTCGTTCAGGTCGATGCGTTATCGGCTGAAGAAATTGGGACTGGATTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (9-118)

• Sigma-54 interaction domain (Sigma54_activat) (139-304)

• Bacterial regulatory protein, Fis family (HTH_8) (405-445)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	77.878	98.884	0.77
pilR	Acinetobacter baumannii strain A118	49.455	100	0.507
luxO	Vibrio cholerae strain A1552	40.342	91.295	0.368