Detailed information NTG0627604

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: LOY48_RS18830
• Genome accession: NZ_CP087186
• Coordinates: 4292621..4294855 (-)
• Length: 744 a.a.
• NCBI ID: WP_258707069.1
• Uniprot ID: -
• Organism: Pseudomonas siliginis strain B21-063
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4287621..4299855

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LOY48_RS18795 (LOY48_18770)	murB	4287999..4289018 (-)	1020	WP_258707066.1	UDP-N-acetylmuramate dehydrogenase	-
LOY48_RS18800 (LOY48_18775)	-	4289015..4289479 (-)	465	WP_076563814.1	low molecular weight protein-tyrosine-phosphatase	-
LOY48_RS18805 (LOY48_18780)	kdsB	4289479..4290243 (-)	765	WP_041479456.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
LOY48_RS18810 (LOY48_18785)	-	4290240..4290425 (-)	186	WP_258707067.1	Trm112 family protein	-
LOY48_RS18815 (LOY48_18790)	lpxK	4290449..4291459 (-)	1011	WP_258707068.1	tetraacyldisaccharide 4'-kinase	-
LOY48_RS18820 (LOY48_18795)	-	4291459..4291887 (-)	429	WP_041479458.1	biopolymer transporter ExbD	-
LOY48_RS18825 (LOY48_18800)	exbB	4291884..4292519 (-)	636	WP_016771007.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
LOY48_RS18830 (LOY48_18805)	comA	4292621..4294855 (-)	2235	WP_258707069.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
LOY48_RS18835 (LOY48_18810)	-	4294992..4295510 (+)	519	WP_039760200.1	DUF2062 domain-containing protein	-
LOY48_RS18840 (LOY48_18815)	-	4295650..4296429 (-)	780	WP_056788203.1	ABC transporter permease	-
LOY48_RS18845 (LOY48_18820)	-	4296426..4297358 (-)	933	WP_076563818.1	ABC transporter ATP-binding protein	-
LOY48_RS18850 (LOY48_18825)	-	4297492..4298115 (-)	624	WP_258707070.1	glutathione S-transferase family protein	-
LOY48_RS18855 (LOY48_18830)	-	4298159..4298818 (-)	660	WP_258707071.1	transglutaminase family protein	-

Sequence

Protein

• Length: 744 a.a.
• Molecular weight: 82105.38 Da
• Isoelectric Point: 10.1113

>NTDB_id=627604 LOY48_RS18830 WP_258707069.1 4292621..4294855(-) (comA) [Pseudomonas siliginis strain B21-063]
MRTGMMALAVGLLAPVFLPALPPVGWLLVLPMVALMLLPFRSFPLAFLLFGFTWACVGAQWALNDRLPPSLDGETRWLEG
RVVGLPQHSDGVVRFELADARSRHEKLPSLLRLAWYAGPPVNSGERWRLAVKLKRPSGLLNPHAFDYEAWLLAQRIGATG
TIKDGQRLAEARYAWRDGVRQRLLAVDAQGREGALAALVLGDGSGLSREDWQILQDTGTVHLLVISGQHIGLLAAVMYLL
VAGLARFGIWPVRWPWLPWACGLAFAAALGYGLLAGFDVPVQRACVMVALVLLWRLRFRHLGAWWPLLLAFNGVLLFDPL
ASLRPGFWLSFAAVAVLIFTFGGRLGAWRWWQTWTRAQWLIAIGLCPVLLALSLPISVSGPVANLLAVPWVSLVVLPPAL
LGTLLLPVPYVGEGLLWLAGGLIDWLFIGLALIAGQWPAWIPAAIPLWALVLGSLGAILLLLPRGVPMRPLGWPLLLLLI
WPPQERIEERRADVWQLDVGQGLAILVRTRHHALLYDAGPRFGEFDLGERVVLPALRKLNVQALDLMLLSHADADHAGGA
RAVMRGLNVRRVVSGDPPNLPPELNAEACASGEQWQWDGVQFQLWQWSAADDSNQRSCVLQIEANGERLLLTGDIDIHAE
RVLLDSPLAVPTQWLQSPHHGSRSSSSMALLKALQPEAVLISRGHGNSFGHPHPTVLVRYRKQGLRIYDSAEHGAIHLQL
GSFKPPWSMRQQRRFWRNPPAPGR

Nucleotide

• Length: 2235 bp

>NTDB_id=627604 LOY48_RS18830 WP_258707069.1 4292621..4294855(-) (comA) [Pseudomonas siliginis strain B21-063]
ATGCGCACAGGGATGATGGCGCTGGCAGTCGGTCTGCTGGCCCCGGTTTTTTTGCCGGCCTTGCCGCCGGTCGGTTGGTT
GCTGGTGCTGCCAATGGTGGCGCTGATGTTGCTGCCGTTTCGCAGCTTTCCATTGGCGTTTTTGCTGTTTGGCTTTACCT
GGGCCTGCGTTGGCGCGCAGTGGGCGCTAAATGACCGCTTGCCACCGAGCCTCGACGGCGAAACCCGTTGGCTCGAAGGG
CGCGTGGTCGGTTTGCCGCAACACAGCGATGGCGTGGTGCGTTTCGAGCTGGCTGATGCGCGCTCACGCCACGAAAAACT
GCCATCGCTGCTGCGCCTGGCCTGGTACGCCGGGCCGCCGGTCAACAGCGGCGAGCGCTGGCGACTGGCGGTGAAGTTGA
AGCGCCCGAGTGGCCTACTCAACCCGCACGCCTTCGACTACGAGGCCTGGCTGCTGGCGCAACGGATCGGCGCAACCGGC
ACGATCAAGGATGGTCAGCGCCTGGCTGAGGCCCGGTATGCATGGCGCGACGGCGTTCGCCAGCGCCTGCTGGCGGTGGA
TGCGCAAGGACGCGAGGGCGCGCTGGCGGCGCTGGTGCTTGGCGACGGTTCGGGGCTGAGTCGCGAGGACTGGCAGATTC
TGCAAGACACCGGCACCGTGCATTTGCTGGTGATCTCCGGACAGCACATCGGTTTGCTGGCGGCTGTGATGTATCTGCTG
GTCGCCGGGCTGGCGCGTTTCGGAATCTGGCCGGTGCGCTGGCCATGGTTGCCGTGGGCGTGTGGCCTGGCATTCGCGGC
GGCGCTGGGTTACGGCTTGCTCGCCGGGTTCGATGTGCCGGTGCAGCGCGCCTGCGTGATGGTGGCGCTGGTGCTGCTGT
GGCGGCTGCGTTTTCGCCATCTCGGCGCGTGGTGGCCGTTATTGCTGGCGTTCAATGGCGTGCTGTTGTTCGATCCGCTG
GCCAGTTTGCGTCCGGGTTTCTGGCTGTCCTTCGCGGCGGTGGCAGTGTTGATCTTCACCTTTGGCGGTCGGCTGGGGGC
CTGGCGCTGGTGGCAGACCTGGACCCGCGCGCAGTGGCTGATCGCGATCGGCTTGTGTCCGGTGTTGCTGGCGCTGAGCT
TGCCCATCAGCGTCAGCGGGCCTGTAGCCAATCTGCTGGCCGTTCCGTGGGTCAGCCTCGTGGTGCTGCCGCCGGCATTG
CTCGGCACGCTATTGCTGCCCGTGCCTTATGTTGGCGAAGGACTGTTGTGGCTGGCCGGTGGTTTGATCGACTGGCTGTT
TATCGGGCTGGCGCTGATTGCCGGGCAATGGCCGGCGTGGATACCGGCCGCCATTCCATTGTGGGCGTTGGTCCTGGGCA
GCCTTGGCGCGATTTTATTGCTGTTGCCCCGTGGCGTGCCAATGCGTCCGTTGGGCTGGCCGCTGCTGTTGCTTTTGATA
TGGCCGCCTCAAGAGCGAATAGAAGAAAGGCGAGCGGATGTCTGGCAACTCGACGTCGGCCAAGGCTTGGCCATCCTTGT
TCGCACCCGCCATCACGCGCTTCTCTATGACGCCGGCCCGCGTTTCGGCGAGTTCGATCTCGGCGAGCGAGTGGTATTGC
CAGCGTTACGTAAACTCAATGTGCAAGCGCTCGACTTGATGCTGCTCAGCCACGCTGACGCCGATCACGCTGGCGGCGCC
CGGGCGGTCATGCGTGGATTGAACGTGCGCCGCGTGGTCAGCGGCGATCCGCCGAACCTGCCGCCGGAGCTGAACGCCGA
AGCCTGCGCGAGTGGCGAACAGTGGCAGTGGGATGGCGTGCAGTTCCAGCTCTGGCAATGGTCGGCGGCCGATGACAGCA
ACCAGCGCTCCTGTGTATTGCAGATCGAAGCCAACGGTGAACGCCTGCTGCTCACCGGCGACATCGACATTCACGCCGAG
CGCGTTCTGCTCGACAGCCCACTGGCCGTGCCGACGCAGTGGCTGCAATCGCCACATCACGGCAGTCGCAGTTCATCATC
GATGGCTCTGCTCAAAGCCTTGCAGCCCGAAGCGGTACTGATCTCCCGTGGCCACGGCAACTCCTTCGGTCATCCGCATC
CAACCGTGCTGGTGCGCTACCGCAAGCAAGGTCTGCGCATCTACGACAGCGCCGAGCACGGTGCCATTCATCTGCAACTG
GGCAGTTTCAAGCCGCCGTGGTCGATGCGTCAGCAGCGTCGTTTCTGGCGCAACCCGCCGGCGCCCGGTCGTTGA

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (20-167)

• Competence protein (Competence) (198-464)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	63.421	96.64	0.613
comA	Ralstonia pseudosolanacearum GMI1000	35.678	100	0.375