Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LOY48_RS18825 Genome accession   NZ_CP087186
Coordinates   4291884..4292519 (-) Length   211 a.a.
NCBI ID   WP_016771007.1    Uniprot ID   A0AAU7ERB8
Organism   Pseudomonas siliginis strain B21-063     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4286884..4297519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY48_RS18790 (LOY48_18765) - 4287280..4287750 (-) 471 WP_041479453.1 (2Fe-2S)-binding protein -
  LOY48_RS18795 (LOY48_18770) murB 4287999..4289018 (-) 1020 WP_258707066.1 UDP-N-acetylmuramate dehydrogenase -
  LOY48_RS18800 (LOY48_18775) - 4289015..4289479 (-) 465 WP_076563814.1 low molecular weight protein-tyrosine-phosphatase -
  LOY48_RS18805 (LOY48_18780) kdsB 4289479..4290243 (-) 765 WP_041479456.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LOY48_RS18810 (LOY48_18785) - 4290240..4290425 (-) 186 WP_258707067.1 Trm112 family protein -
  LOY48_RS18815 (LOY48_18790) lpxK 4290449..4291459 (-) 1011 WP_258707068.1 tetraacyldisaccharide 4'-kinase -
  LOY48_RS18820 (LOY48_18795) - 4291459..4291887 (-) 429 WP_041479458.1 biopolymer transporter ExbD -
  LOY48_RS18825 (LOY48_18800) exbB 4291884..4292519 (-) 636 WP_016771007.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LOY48_RS18830 (LOY48_18805) comA 4292621..4294855 (-) 2235 WP_258707069.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LOY48_RS18835 (LOY48_18810) - 4294992..4295510 (+) 519 WP_039760200.1 DUF2062 domain-containing protein -
  LOY48_RS18840 (LOY48_18815) - 4295650..4296429 (-) 780 WP_056788203.1 ABC transporter permease -
  LOY48_RS18845 (LOY48_18820) - 4296426..4297358 (-) 933 WP_076563818.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22913.06 Da        Isoelectric Point: 6.8770

>NTDB_id=627603 LOY48_RS18825 WP_016771007.1 4291884..4292519(-) (exbB) [Pseudomonas siliginis strain B21-063]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=627603 LOY48_RS18825 WP_016771007.1 4291884..4292519(-) (exbB) [Pseudomonas siliginis strain B21-063]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCCATGGCGATCGTCGC
CGAGCGCCTGTGGACACTGCGCGCCAGTCGCGTCACCCCCGAGCATCTGCTGGGTCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTCAACAAGGAAAAACTCAAGGAATTGCGCGCCAACTCGCCGCTGGGGGAAATCCTCGCCGCAGGCCTGGCCAAT
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCCGCGCGGGTCATTCATGAACTCGAACGCTACAT
CAACGCCCTCGGCACCATCGCCGCCATGGCGCCGCTGCTCGGCCTGCTCGGCACCGTGCTGGGCATGATCGACATTTTCA
GTGCCTTCACCGGCTCTGGCATGACCACCAATGCCTCGGTGCTGGCCGGCGGTATTTCCAAAGCGCTGATCACGACCGCA
GCGGGCCTGATGGTCGGTATTCCGGCGGTGTTCTTCCACCGCTTCCTGCAACGTCGTATCGACGAGCTGGTGGTCGGTAT
GGAGCAGGAAGCGATCAAACTGGTGGAAGTGGTGCAGGGCGACCGTGATGTCGATCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.782

100

0.858