Detailed information NTG0627575

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: LOY51_RS07930
• Genome accession: NZ_CP087185
• Coordinates: 1706053..1708272 (+)
• Length: 739 a.a.
• NCBI ID: WP_258645597.1
• Uniprot ID: -
• Organism: Pseudomonas sichuanensis strain B21-027
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1701053..1713272

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LOY51_RS07900 (LOY51_07895)	-	1701576..1701827 (-)	252	WP_258645589.1	DUF3077 domain-containing protein	-
LOY51_RS07905 (LOY51_07900)	-	1701824..1702063 (-)	240	WP_125857881.1	hypothetical protein	-
LOY51_RS07910 (LOY51_07905)	-	1702931..1703554 (+)	624	WP_258645592.1	glutathione S-transferase	-
LOY51_RS07915 (LOY51_07910)	-	1703690..1704622 (+)	933	WP_125857883.1	ABC transporter ATP-binding protein	-
LOY51_RS07920 (LOY51_07915)	-	1704619..1705398 (+)	780	WP_125463214.1	ABC transporter permease	-
LOY51_RS07925 (LOY51_07920)	-	1705282..1705908 (-)	627	WP_258645595.1	DUF2062 domain-containing protein	-
LOY51_RS07930 (LOY51_07925)	comA	1706053..1708272 (+)	2220	WP_258645597.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
LOY51_RS07935 (LOY51_07930)	exbB	1708686..1709321 (+)	636	WP_138221286.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
LOY51_RS07940 (LOY51_07935)	-	1709318..1709752 (+)	435	WP_258645599.1	biopolymer transporter ExbD	-
LOY51_RS07945 (LOY51_07940)	lpxK	1709752..1710756 (+)	1005	WP_125857887.1	tetraacyldisaccharide 4'-kinase	-
LOY51_RS07950 (LOY51_07945)	-	1710797..1710982 (+)	186	WP_125463219.1	Trm112 family protein	-
LOY51_RS07955 (LOY51_07950)	kdsB	1710979..1711743 (+)	765	WP_125857888.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
LOY51_RS07960 (LOY51_07955)	-	1711743..1712207 (+)	465	WP_125857889.1	low molecular weight protein-tyrosine-phosphatase	-
LOY51_RS07965 (LOY51_07960)	murB	1712204..1713223 (+)	1020	WP_125857890.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 739 a.a.
• Molecular weight: 79980.87 Da
• Isoelectric Point: 11.2280

>NTDB_id=627575 LOY51_RS07930 WP_258645597.1 1706053..1708272(+) (comA) [Pseudomonas sichuanensis strain B21-027]
MRTGMLALVLGLLSLRFLPALPPVGWLLALLLLGLACLRTRGWPLGCYLLGLCWACWSAQQALDDRLAVALDGRTLWLEG
RVVGLPARTEHGVRFELEQTSSRRAELPQRLQLSWFDGPGLRGGERWRLAVNLRRPHGLLNPHGPDREATLLARRTGASG
TVKAGERLGAPAHDWRDGIRQRLLAVDAHGREAALAALVLGDGAGLARQDWQALQATGTVHLLVISGQHIGLLAGLVYGG
VAGLARLGAWPRRLPWLPWACGLAMGAALLYGWLAGFGVPVQRACLMLAVVLLWRLRFRQLGVGLPLLLALLGVLLVEPL
ASLLPGFWLSFAAVAVLALCFSARLGAWRPWRAWTRAQWVIAVGLLPVLLALGLPISLTAPLANLLAVPWLSLAVLPLAL
LGTALLPLPWLGEGLLWLAGASLHGLFGWLTQVARLVPAWIAEPLPLWAGLLVGLGALLVLLPRGVPLRAPGAVLMLALW
APREQVPHGQVEVWQLDVGQGLAVLLRTRQHSLLYDAGPAMGASDLGESVVLPTLRKLGVRQLDLMLISHAHADHAGGAV
AVHRGLPVKRVLAGEATALAAGLRGQPCKSGERWQWDGVDFELWQWPAGPNSNERSCVLRVEANGERLLLAGDMEAGAER
AWLAATEDPRIDWLQSPHHGSRTSSSEALIRAMAPRGVLISRGRHNGFGHPHPQVIERYRRQGMSIHDTALEGALRLWLG
RHGGVEGGRGQRRFWRDQE

Nucleotide

• Length: 2220 bp

>NTDB_id=627575 LOY51_RS07930 WP_258645597.1 1706053..1708272(+) (comA) [Pseudomonas sichuanensis strain B21-027]
ATGCGCACAGGGATGCTTGCGCTCGTGCTCGGGCTGTTGAGCCTGCGCTTTCTGCCTGCTCTGCCACCGGTCGGGTGGTT
GCTTGCACTGCTATTGCTGGGGCTGGCCTGCCTGCGTACGCGGGGCTGGCCGCTTGGCTGTTACCTGTTGGGGCTGTGCT
GGGCGTGCTGGTCGGCGCAGCAGGCACTGGATGATCGGCTGGCCGTGGCACTGGACGGGCGCACCTTGTGGCTGGAGGGG
CGGGTGGTCGGCCTGCCGGCGCGCACCGAGCACGGTGTGCGCTTCGAGCTGGAGCAGACCAGCTCGCGTCGGGCCGAGTT
GCCGCAGCGGTTGCAACTGAGCTGGTTCGATGGCCCTGGGTTACGCGGCGGGGAGCGCTGGCGGCTGGCGGTCAACTTGC
GGCGCCCGCATGGGTTGCTCAACCCCCATGGCCCGGACCGCGAGGCTACCCTGCTGGCACGGCGGACCGGCGCGAGCGGC
ACGGTCAAGGCGGGTGAGCGGCTGGGCGCTCCCGCCCATGACTGGCGTGACGGTATCCGCCAACGCTTGCTGGCAGTCGA
TGCCCATGGGCGTGAGGCGGCCCTGGCGGCGCTGGTGCTGGGCGATGGCGCGGGGCTGGCGCGCCAGGACTGGCAGGCCC
TGCAAGCCACCGGCACGGTCCACCTGCTGGTGATCTCCGGGCAGCATATCGGGCTGCTGGCCGGGTTGGTCTATGGCGGG
GTGGCCGGGCTGGCCCGCCTGGGCGCCTGGCCGCGACGCCTGCCTTGGTTGCCCTGGGCCTGCGGCCTGGCCATGGGGGC
GGCGCTGTTGTACGGCTGGCTGGCGGGCTTTGGCGTGCCGGTACAGCGTGCCTGCCTGATGCTGGCGGTGGTACTGCTGT
GGCGCCTGCGCTTTCGCCAGCTGGGCGTGGGGCTGCCCTTGTTGCTGGCGCTGCTGGGGGTGTTGCTGGTCGAGCCGCTG
GCCAGCCTGTTGCCGGGCTTCTGGCTATCGTTCGCCGCCGTGGCGGTGTTGGCGCTGTGTTTTTCTGCCCGGCTGGGTGC
CTGGCGGCCTTGGCGGGCCTGGACGCGGGCGCAGTGGGTGATCGCCGTGGGCCTGCTGCCGGTGCTGCTGGCGCTGGGCC
TGCCGATCAGCCTTACGGCGCCGCTGGCCAACCTGCTGGCGGTGCCGTGGCTGAGCCTGGCGGTGCTGCCCTTGGCCTTG
CTCGGTACCGCGCTGTTGCCGCTGCCCTGGCTGGGGGAGGGGCTGTTGTGGCTGGCGGGCGCTTCGCTGCACGGCCTGTT
TGGCTGGCTTACCCAGGTGGCAAGGCTTGTGCCGGCGTGGATTGCCGAGCCACTGCCGCTGTGGGCCGGGCTGCTGGTGG
GGCTTGGCGCGTTGCTGGTGCTGTTGCCTCGGGGCGTGCCCTTGCGTGCGCCGGGTGCGGTCCTGATGCTGGCCCTGTGG
GCGCCACGTGAGCAGGTGCCGCATGGCCAGGTCGAAGTCTGGCAACTGGACGTTGGCCAAGGGCTGGCGGTGTTGCTGCG
CACCCGCCAGCACAGCCTGTTGTATGACGCCGGCCCCGCGATGGGGGCAAGCGACCTTGGGGAAAGCGTGGTGCTGCCGA
CCTTGCGCAAGCTCGGGGTGCGGCAGTTGGACCTGATGCTGATCAGCCATGCCCATGCCGACCATGCCGGGGGCGCCGTA
GCCGTTCATCGTGGGCTGCCGGTGAAACGGGTGTTGGCCGGCGAAGCGACGGCGTTGGCGGCAGGCTTGCGTGGCCAGCC
CTGCAAGAGTGGCGAGCGCTGGCAATGGGATGGTGTCGATTTCGAGCTCTGGCAATGGCCGGCCGGGCCCAATAGCAACG
AGCGGTCCTGTGTGCTGCGGGTCGAGGCCAATGGCGAGCGGCTGTTGCTGGCAGGCGACATGGAGGCCGGGGCCGAGCGG
GCCTGGCTGGCCGCGACGGAGGATCCGCGCATCGACTGGCTGCAGTCGCCGCATCATGGCAGCCGCACGTCGTCCAGCGA
GGCGCTCATCAGGGCCATGGCCCCGCGCGGGGTGTTGATATCGCGCGGGCGGCACAATGGGTTCGGGCATCCTCATCCGC
AGGTTATCGAGCGCTATCGGCGGCAGGGTATGAGCATTCATGACACGGCCTTGGAGGGCGCACTGCGGTTGTGGTTGGGG
CGCCATGGTGGGGTGGAAGGGGGGCGGGGGCAGCGGCGGTTCTGGCGCGATCAGGAATGA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (497-678)

• Domain of unknown function (DUF4131) (DUF4131) (21-167)

• Competence protein (Competence) (198-463)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	59.583	97.429	0.581
comA	Ralstonia pseudosolanacearum GMI1000	36.548	100	0.415