Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LOY51_RS07935 Genome accession   NZ_CP087185
Coordinates   1708686..1709321 (+) Length   211 a.a.
NCBI ID   WP_138221286.1    Uniprot ID   -
Organism   Pseudomonas sichuanensis strain B21-027     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1703686..1714321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY51_RS07915 (LOY51_07910) - 1703690..1704622 (+) 933 WP_125857883.1 ABC transporter ATP-binding protein -
  LOY51_RS07920 (LOY51_07915) - 1704619..1705398 (+) 780 WP_125463214.1 ABC transporter permease -
  LOY51_RS07925 (LOY51_07920) - 1705282..1705908 (-) 627 WP_258645595.1 DUF2062 domain-containing protein -
  LOY51_RS07930 (LOY51_07925) comA 1706053..1708272 (+) 2220 WP_258645597.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LOY51_RS07935 (LOY51_07930) exbB 1708686..1709321 (+) 636 WP_138221286.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LOY51_RS07940 (LOY51_07935) - 1709318..1709752 (+) 435 WP_258645599.1 biopolymer transporter ExbD -
  LOY51_RS07945 (LOY51_07940) lpxK 1709752..1710756 (+) 1005 WP_125857887.1 tetraacyldisaccharide 4'-kinase -
  LOY51_RS07950 (LOY51_07945) - 1710797..1710982 (+) 186 WP_125463219.1 Trm112 family protein -
  LOY51_RS07955 (LOY51_07950) kdsB 1710979..1711743 (+) 765 WP_125857888.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LOY51_RS07960 (LOY51_07955) - 1711743..1712207 (+) 465 WP_125857889.1 low molecular weight protein-tyrosine-phosphatase -
  LOY51_RS07965 (LOY51_07960) murB 1712204..1713223 (+) 1020 WP_125857890.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22873.20 Da        Isoelectric Point: 7.3616

>NTDB_id=627576 LOY51_RS07935 WP_138221286.1 1708686..1709321(+) (exbB) [Pseudomonas sichuanensis strain B21-027]
MWELVKSGGWMMLPIILSSIVAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVLQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=627576 LOY51_RS07935 WP_138221286.1 1708686..1709321(+) (exbB) [Pseudomonas sichuanensis strain B21-027]
GTGTGGGAATTGGTCAAGTCCGGTGGCTGGATGATGCTGCCGATCATCCTGAGTTCCATCGTTGCCATGGCAATCGTCGT
CGAGCGCCTGTGGACCCTGCGCGCCAGCCGTGTCACCCCGCCGCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAACTCACCAGTGACAAGCTCAAGGCCCTGCGCGCCGATTCGCCGCTGGGCGAGATCCTCGCCGCAGGCCTGGCCAAC
TCGCGCCATGGCCGCGAGATCATGAAAGAGTGCATCGAGGAAGCCGCCTCGCGGGTCATCCACGAGCTGGAGCGCTATAT
CAGCACCCTCGGCACCATCGCTGCCATGGCCCCGCTGCTCGGCCTGCTGGGCACGGTGCTGGGCATGATCGACATCTTCA
GCGCCTTCATGGGCTCGCAGATGACCGCCAACGCCGCAGTACTCGCCGGGGGTATTTCCAAGGCCCTGGTGACCACGGCC
GCCGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGTTTCCTGCTGCGCCGCATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAACTGGTGGAAGTGTTGCAGGGCGATCGTGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.464

100

0.825