Detailed information NTG0627559

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: LOY35_RS23975
• Genome accession: NZ_CP087184
• Coordinates: 5542216..5543559 (+)
• Length: 447 a.a.
• NCBI ID: WP_258627926.1
• Uniprot ID: -
• Organism: Pseudomonas sp. B21-028
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5537216..5548559

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LOY35_RS23950 (LOY35_23915)	pgeF	5537430..5538155 (-)	726	WP_258627917.1	peptidoglycan editing factor PgeF	-
LOY35_RS23955 (LOY35_23920)	rluD	5538152..5539114 (-)	963	WP_041021343.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
LOY35_RS23960 (LOY35_23925)	-	5539265..5540281 (+)	1017	WP_258627921.1	outer membrane protein assembly factor BamD	-
LOY35_RS23965 (LOY35_23930)	-	5540407..5540640 (+)	234	WP_258627923.1	PP0621 family protein	-
LOY35_RS23970 (LOY35_23935)	pilS	5540630..5542219 (+)	1590	WP_258627925.1	nitrogen regulation protein NR(II)	Regulator
LOY35_RS23975 (LOY35_23940)	pilR	5542216..5543559 (+)	1344	WP_258627926.1	sigma-54 dependent transcriptional regulator	Regulator
LOY35_RS23980 (LOY35_23945)	-	5543764..5544129 (-)	366	WP_258627928.1	DUF6124 family protein	-
LOY35_RS23985 (LOY35_23950)	thiO	5545048..5546148 (-)	1101	WP_258627930.1	glycine oxidase ThiO	-
LOY35_RS23990 (LOY35_23955)	-	5546206..5546604 (-)	399	WP_258627934.1	type IV pilin protein	-

Sequence

Protein

• Length: 447 a.a.
• Molecular weight: 50206.59 Da
• Isoelectric Point: 5.9913

>NTDB_id=627559 LOY35_RS23975 WP_258627926.1 5542216..5543559(+) (pilR) [Pseudomonas sp. B21-028]
MNTRSRQRILIVDDEPDIRELLDITLGRMKLDTRSARNLAEAQSLLADEAFDLCLTDMRLPDGTGLELVQHIQQRFPQLP
VAMITAYGSLETAIDALKAGAFDFLTKPVDLGRLRELVTSALRLPPATVPTTIERCLLGDSPPMRSVRKQIEKLARSQAP
VYISGESGCGKELVARLIHEQGPRSSRSFVPVNCGAIPTELMESEFFGHRKGSFSGAIEDKPGLFQAANGGTLFLDEVAD
LPLAMQVKLLRAIQEKAVRAVGGQQEEVVDVRILCATHKDLDAEVAAGRFRQDLYYRLNVIELRVPPLRERREDIEPLAN
HMLQRLVANTGNPAARLHPQALEALRNYRFPGNVRELENMLERAYTLCEHQQIEADDLRLAEGNGITDTASPDLMRVDNL
EDYLEDVERKVILQALEETRWNRTAAAQRLKLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1344 bp

>NTDB_id=627559 LOY35_RS23975 WP_258627926.1 5542216..5543559(+) (pilR) [Pseudomonas sp. B21-028]
TTGAATACACGCTCACGGCAACGGATCCTGATCGTCGATGACGAACCGGACATCCGCGAACTCCTGGACATCACCCTGGG
CAGGATGAAACTCGACACCCGCAGCGCCAGGAATCTTGCCGAGGCCCAATCCCTGCTGGCGGACGAGGCCTTCGACCTGT
GCCTGACCGACATGCGCCTGCCCGACGGAACCGGCCTGGAACTGGTGCAGCACATCCAGCAACGCTTCCCGCAACTGCCC
GTGGCGATGATCACCGCCTACGGCAGCCTGGAAACCGCCATCGACGCCCTCAAGGCCGGGGCTTTTGACTTTCTGACCAA
ACCGGTCGACCTGGGTCGACTGCGGGAACTGGTCACCAGCGCCCTGCGCCTGCCGCCTGCCACCGTCCCGACCACCATCG
AACGCTGCCTGCTGGGTGACTCGCCGCCGATGCGCAGCGTGCGCAAACAGATCGAAAAACTGGCCCGCAGCCAGGCACCG
GTGTACATCAGCGGGGAGTCCGGCTGTGGCAAGGAGCTGGTGGCACGGCTGATCCACGAACAAGGCCCCCGCTCCAGCCG
GAGCTTTGTGCCGGTCAACTGTGGGGCCATTCCGACAGAGCTGATGGAAAGCGAGTTTTTCGGCCATCGAAAAGGCAGCT
TCAGCGGTGCCATCGAGGACAAGCCAGGTCTGTTCCAGGCCGCCAATGGTGGCACCCTGTTTCTCGATGAAGTGGCCGAC
CTGCCCCTGGCAATGCAGGTCAAACTGCTGCGGGCGATCCAGGAAAAAGCCGTGCGCGCCGTTGGCGGCCAGCAGGAGGA
AGTGGTGGATGTCCGCATCCTCTGTGCCACCCATAAGGACCTGGACGCCGAAGTCGCCGCCGGACGCTTTCGTCAGGATC
TGTACTATCGACTGAACGTCATCGAACTCCGCGTCCCGCCCCTGCGCGAACGCCGCGAAGACATCGAACCGCTGGCCAAC
CACATGCTCCAGCGTCTGGTGGCCAACACCGGCAACCCAGCCGCCAGACTCCATCCCCAAGCCCTCGAAGCCCTTCGAAA
CTACCGCTTCCCCGGTAACGTGCGCGAGCTGGAAAACATGCTCGAACGGGCCTACACCCTCTGCGAACACCAACAGATCG
AAGCCGACGACCTGCGCCTGGCCGAAGGCAACGGCATCACCGACACCGCCAGCCCCGATCTGATGCGGGTCGACAACCTG
GAAGACTATCTGGAAGACGTCGAACGCAAAGTCATCCTCCAGGCCCTGGAAGAAACCCGCTGGAACCGCACGGCGGCGGC
ACAACGGTTGAAGCTATCGTTTCGGTCGATGCGGTATCGGCTGAAGAAGTTGGGGTTGGATTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (9-118)

• Bacterial regulatory protein, Fis family (HTH_8) (404-444)

• Sigma-54 interaction domain (Sigma54_activat) (138-303)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	79.73	99.329	0.792
pilR	Acinetobacter baumannii strain A118	49.237	100	0.506