Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   LOY35_RS23970 Genome accession   NZ_CP087184
Coordinates   5540630..5542219 (+) Length   529 a.a.
NCBI ID   WP_258627925.1    Uniprot ID   -
Organism   Pseudomonas sp. B21-028     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5535630..5547219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY35_RS23950 (LOY35_23915) pgeF 5537430..5538155 (-) 726 WP_258627917.1 peptidoglycan editing factor PgeF -
  LOY35_RS23955 (LOY35_23920) rluD 5538152..5539114 (-) 963 WP_041021343.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LOY35_RS23960 (LOY35_23925) - 5539265..5540281 (+) 1017 WP_258627921.1 outer membrane protein assembly factor BamD -
  LOY35_RS23965 (LOY35_23930) - 5540407..5540640 (+) 234 WP_258627923.1 PP0621 family protein -
  LOY35_RS23970 (LOY35_23935) pilS 5540630..5542219 (+) 1590 WP_258627925.1 nitrogen regulation protein NR(II) Regulator
  LOY35_RS23975 (LOY35_23940) pilR 5542216..5543559 (+) 1344 WP_258627926.1 sigma-54 dependent transcriptional regulator Regulator
  LOY35_RS23980 (LOY35_23945) - 5543764..5544129 (-) 366 WP_258627928.1 DUF6124 family protein -
  LOY35_RS23985 (LOY35_23950) thiO 5545048..5546148 (-) 1101 WP_258627930.1 glycine oxidase ThiO -
  LOY35_RS23990 (LOY35_23955) - 5546206..5546604 (-) 399 WP_258627934.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58680.26 Da        Isoelectric Point: 7.0771

>NTDB_id=627558 LOY35_RS23970 WP_258627925.1 5540630..5542219(+) (pilS) [Pseudomonas sp. B21-028]
MITEASSPRVRQTQRLLRLYHLYRLSIGITLVLLISSNMDNRLLAFANDDLLRSGSWLYLVLNILLVVFLENTRRPARLF
GLALTDVLLLSWLFFVAGGAPSAIGNLLIVSVAIGNTLLRGRIGLLIAAVATIGIVGSSFFLGLNDSNPPGSYLQAGTLG
ALCFAAALLVQGLTRRLEASETLAEQRASEVTSLETLNALILQRMRTGILVLDRQRRVQLANESALNLLGMHDLVGQPID
EYSSALVDSLKVWLNNPSLRPPSLTVPGTGLTLQPNFIALGHNEQHQVLVFLEDLAQVAQHAQQLKLASLGRLTAGIAHE
IRNPLGAISHAAQLLRESEELNDSDRRLTQIIQDHSQRMNRVIENVLQVSRRRQTTPQRLDLRTWLDQFVQQARENMAAH
QQLHLSIAPGDYTTLMDPDQLTQVLDNLLRNAWRHSAQDHEQAEAWLELFVDSHSHLPTLDIIDNGPGVTPDQQAHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKPRQGGGCFRITFAHGRKQI

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=627558 LOY35_RS23970 WP_258627925.1 5540630..5542219(+) (pilS) [Pseudomonas sp. B21-028]
GTGATCACTGAGGCTTCAAGCCCTCGCGTCAGACAGACGCAGCGCCTGCTGCGTCTCTATCACCTGTACCGCTTGAGCAT
CGGCATTACCCTGGTGCTGCTGATCTCCAGCAACATGGACAACCGCCTGCTGGCCTTCGCCAACGACGACCTGTTGCGCA
GCGGCAGCTGGTTGTACCTGGTACTGAACATCCTGCTGGTGGTGTTCCTTGAAAACACCCGCCGCCCGGCCCGGTTGTTT
GGTCTGGCGCTCACCGATGTGCTGCTGCTGTCATGGCTGTTCTTCGTCGCGGGCGGCGCCCCCAGCGCCATCGGCAACCT
GCTCATCGTCTCGGTGGCCATCGGCAATACACTGTTGCGCGGTCGAATCGGCCTGTTGATCGCCGCCGTTGCCACGATCG
GCATCGTCGGCTCGAGTTTCTTCCTTGGTCTGAACGACTCGAACCCTCCCGGCAGCTATTTGCAGGCCGGCACCCTGGGC
GCGCTGTGCTTTGCCGCCGCGCTGCTGGTACAGGGCCTGACCCGGCGACTGGAAGCCAGCGAAACCCTGGCCGAGCAACG
GGCCAGCGAGGTGACCAGCCTCGAAACCCTCAATGCCTTGATCCTGCAACGCATGCGCACCGGCATCCTGGTGCTCGATC
GTCAACGCCGGGTGCAACTGGCCAACGAAAGCGCCTTGAATCTGTTGGGCATGCACGACCTGGTCGGCCAGCCAATCGAT
GAGTACTCCAGCGCCCTCGTCGACAGCCTGAAAGTGTGGCTGAACAACCCCAGCCTGCGCCCACCCAGCCTGACCGTTCC
CGGCACGGGCCTGACCCTGCAACCGAACTTCATCGCTCTGGGGCATAACGAACAGCATCAGGTCCTCGTGTTTCTCGAAG
ACCTGGCCCAGGTGGCCCAGCATGCCCAGCAACTGAAACTCGCCTCGCTCGGGCGCCTCACCGCCGGCATCGCCCATGAA
ATCCGCAACCCCCTGGGGGCCATCAGCCATGCGGCGCAATTACTGCGCGAGTCCGAGGAACTGAACGACTCGGATCGACG
TCTGACGCAGATTATTCAAGATCACTCCCAACGAATGAACCGCGTCATCGAAAACGTCCTGCAGGTGTCCCGTCGCCGAC
AAACCACGCCCCAGCGCCTGGACCTGCGCACCTGGCTCGACCAGTTCGTCCAGCAGGCCCGCGAAAACATGGCCGCGCAC
CAGCAATTGCACCTGAGCATCGCCCCGGGCGACTACACCACCCTCATGGACCCCGATCAATTGACCCAGGTGCTCGACAA
CCTGCTGCGCAACGCCTGGCGCCACAGCGCCCAGGACCATGAACAGGCCGAGGCCTGGCTGGAGCTGTTCGTCGATTCCC
ACAGCCATCTTCCCACGCTGGATATCATCGACAACGGCCCCGGCGTGACACCGGACCAACAGGCGCACCTGTTCGAGCCG
TTCTTCACCACCAGCAGCCAGGGCACCGGCCTTGGGCTCTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCCCGCCT
AGACTTCAAACCACGCCAAGGCGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAGATTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60.155

97.732

0.588