Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   LOY24_RS07435 Genome accession   NZ_CP087183
Coordinates   1647352..1649565 (+) Length   737 a.a.
NCBI ID   WP_258655717.1    Uniprot ID   -
Organism   Pseudomonas putida strain B21-029     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1642352..1654565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY24_RS07415 (LOY24_07410) - 1644222..1644845 (+) 624 WP_258655715.1 glutathione S-transferase -
  LOY24_RS07420 (LOY24_07415) - 1644979..1645911 (+) 933 WP_016500911.1 ABC transporter ATP-binding protein -
  LOY24_RS07425 (LOY24_07420) - 1645908..1646687 (+) 780 WP_016500910.1 ABC transporter permease -
  LOY24_RS07430 (LOY24_07425) - 1646571..1647209 (-) 639 WP_258655716.1 DUF2062 domain-containing protein -
  LOY24_RS07435 (LOY24_07430) comA 1647352..1649565 (+) 2214 WP_258655717.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LOY24_RS07440 (LOY24_07435) exbB 1650112..1650747 (+) 636 WP_028614013.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LOY24_RS07445 (LOY24_07440) - 1650744..1651178 (+) 435 WP_016500906.1 biopolymer transporter ExbD -
  LOY24_RS07450 (LOY24_07445) lpxK 1651178..1652179 (+) 1002 WP_258655718.1 tetraacyldisaccharide 4'-kinase -
  LOY24_RS07455 (LOY24_07450) - 1652224..1652409 (+) 186 WP_003247142.1 Trm112 family protein -
  LOY24_RS07460 (LOY24_07455) kdsB 1652406..1653170 (+) 765 WP_258655719.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LOY24_RS07465 (LOY24_07460) - 1653170..1653634 (+) 465 WP_028614017.1 low molecular weight protein-tyrosine-phosphatase -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 79697.55 Da        Isoelectric Point: 10.5441

>NTDB_id=627524 LOY24_RS07435 WP_258655717.1 1647352..1649565(+) (comA) [Pseudomonas putida strain B21-029]
MRTGMFALALGLMCLGFLPVLPSVGWLLALTACAAVSLFTRVWPVGCFLLGLCWACWSAQQALDDRLAAGLDGRTLWLEG
RVVGLPARTGQGVRFELEAARSRRAELPQRLQLSWFDGPPLQAGEQWRLAVTLQRPAGLLNPHGPDREAQLLARRVGATG
TVKAGQLLAPVTGGWRDVLRQRLLAVEANGRQAALVALVLGDGTGLAREDWQTLQATGTVHLLVISGQHIGLVAGLLYGL
VAGLARWGLWPARLPWLPWACGLAMAAALAYGWLAGAGVPVQRACLMLAVVLLWRLRFRHLGATLPLLLALVAVLLVEPL
AALLPGFWLSFTAVATLVYCFSARLGGWRPWQAWTRAQWVIAIGLLPVLLAMGLPVSLTAPLANLVAVPWVSLAVLPLAL
LGTLLLPLGGAGEVLLWLAGGLLDGLFRLLALVAQQRPAWVAPALPLWAWLLVSLGALLVLLPRGVPLRGLGGVMLLALW
VPREPVPHGQVEVWQLDVGQGLAVLLRTRHHSLLYDAGPARGESDLGERVVLPTLRKLGVGSLDTMVISHAHADHAGGAA
AIQRGLPVRRLIGGEALEEVPLQPCTSGEQWDWDGVRFSLWRWAAGQSSNDRSCVLLVEAQGERLLLAGDMEAAAERAWL
ADHETPRIDWLQSPHHGSRSSSTEAFIRATAPRGVLISRGRNNSFGHPHVQVMERYQRHGLAVHDTAVEGALRLVLGRQG
EVEGMRRQRRFWRVRAE

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=627524 LOY24_RS07435 WP_258655717.1 1647352..1649565(+) (comA) [Pseudomonas putida strain B21-029]
ATGCGCACAGGGATGTTTGCGCTCGCGCTTGGGCTGATGTGCCTGGGCTTTCTCCCCGTATTGCCATCGGTCGGATGGCT
GCTAGCGCTGACGGCCTGTGCTGCCGTCAGCCTGTTTACCCGTGTTTGGCCGGTGGGCTGCTTTCTGTTGGGCTTGTGTT
GGGCGTGCTGGTCTGCTCAGCAGGCGCTTGATGATCGCCTAGCTGCAGGCCTGGATGGTCGCACCTTGTGGCTGGAGGGG
CGGGTGGTCGGCTTGCCGGCACGCACGGGGCAAGGCGTGCGCTTTGAGCTGGAGGCGGCACGCTCGCGGCGGGCCGAGCT
GCCGCAACGGTTGCAACTGAGCTGGTTCGACGGGCCGCCGCTGCAGGCCGGTGAGCAGTGGCGGCTGGCGGTGACCTTGC
AGCGCCCGGCCGGGCTGCTCAACCCACATGGGCCCGACCGTGAGGCGCAGCTGCTGGCGCGGCGGGTGGGCGCCACCGGT
ACGGTAAAGGCCGGGCAGCTGCTGGCGCCGGTAACCGGTGGTTGGCGCGATGTGTTGCGCCAGCGCTTGCTGGCGGTTGA
AGCCAATGGCCGGCAGGCCGCGTTGGTGGCACTGGTGCTTGGCGACGGCACAGGCCTGGCCCGGGAGGACTGGCAGACGT
TGCAGGCCACCGGCACGGTGCACCTGCTGGTGATCTCTGGCCAGCATATCGGCCTGGTGGCCGGTTTGCTGTACGGCCTG
GTCGCCGGACTGGCGCGTTGGGGCCTGTGGCCCGCTCGGTTACCGTGGCTGCCCTGGGCGTGTGGCCTGGCCATGGCGGC
GGCGCTGGCCTACGGCTGGCTGGCCGGTGCCGGTGTACCGGTGCAGCGCGCCTGCCTGATGCTGGCGGTGGTGTTGCTCT
GGCGGCTGCGCTTTCGCCATCTCGGTGCGACGCTGCCGCTGTTGCTGGCGCTGGTCGCGGTGCTGCTGGTCGAACCACTG
GCAGCGCTGCTGCCTGGGTTCTGGCTGTCATTTACGGCCGTGGCCACGCTTGTCTATTGCTTCAGTGCCCGGCTAGGTGG
CTGGCGGCCCTGGCAGGCCTGGACACGCGCGCAATGGGTGATCGCCATCGGCCTGCTGCCGGTGTTGCTGGCCATGGGGT
TGCCGGTGAGCCTGACTGCACCGCTGGCCAATCTTGTCGCAGTGCCTTGGGTGAGCCTGGCGGTGCTGCCTTTGGCACTG
CTGGGTACGTTACTGCTGCCACTGGGCGGGGCAGGGGAAGTGCTGTTGTGGCTGGCGGGTGGCCTGCTGGATGGGCTGTT
CCGGCTGCTGGCGCTGGTGGCGCAACAGCGCCCGGCGTGGGTGGCACCGGCCCTTCCACTGTGGGCCTGGCTATTGGTGA
GTCTGGGCGCTCTGTTGGTTTTGCTGCCCCGTGGTGTGCCGCTGCGCGGGTTGGGAGGGGTGATGCTGCTGGCCTTGTGG
GTGCCCAGAGAGCCGGTGCCGCACGGCCAGGTCGAGGTCTGGCAACTGGACGTTGGCCAAGGGCTGGCGGTGCTGTTGCG
CACCCGGCATCACAGCCTGCTGTACGACGCAGGGCCCGCCAGGGGCGAAAGCGACCTGGGTGAGCGGGTGGTGCTACCGA
CGTTGCGCAAGCTGGGGGTGGGCAGCCTGGACACGATGGTGATCAGCCATGCGCATGCCGACCATGCGGGTGGTGCTGCG
GCCATACAGCGTGGTCTGCCGGTCAGGCGGCTGATCGGCGGGGAGGCGCTGGAAGAAGTGCCATTGCAGCCTTGTACCAG
TGGCGAACAATGGGACTGGGATGGCGTGCGCTTTTCGCTGTGGCGCTGGGCGGCCGGGCAGAGCAGCAATGACCGTTCCT
GTGTGCTGTTGGTAGAGGCCCAGGGCGAGCGCTTGCTGCTGGCGGGGGATATGGAAGCTGCTGCCGAACGGGCCTGGCTG
GCGGACCATGAAACGCCGCGTATCGACTGGTTGCAGTCACCGCACCATGGCAGCCGCAGTTCGTCCACCGAGGCGTTCAT
CCGGGCTACTGCGCCGCGTGGGGTATTGATTTCGCGAGGGCGCAACAACAGCTTCGGGCACCCGCATGTTCAGGTGATGG
AGCGTTATCAGCGGCATGGGCTGGCGGTGCATGACACGGCGGTGGAGGGGGCGTTGCGGTTGGTGTTGGGGCGGCAGGGA
GAGGTTGAGGGTATGAGGAGGCAGCGGCGGTTTTGGCGGGTTCGAGCTGAATGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(21-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-674)

Competence protein (Competence)

(198-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.223

97.829

0.579
  comA Ralstonia pseudosolanacearum GMI1000

36.445

100

0.387