Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LOY24_RS07440 Genome accession   NZ_CP087183
Coordinates   1650112..1650747 (+) Length   211 a.a.
NCBI ID   WP_028614013.1    Uniprot ID   A0AAU8S5I2
Organism   Pseudomonas putida strain B21-029     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1645112..1655747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY24_RS07425 (LOY24_07420) - 1645908..1646687 (+) 780 WP_016500910.1 ABC transporter permease -
  LOY24_RS07430 (LOY24_07425) - 1646571..1647209 (-) 639 WP_258655716.1 DUF2062 domain-containing protein -
  LOY24_RS07435 (LOY24_07430) comA 1647352..1649565 (+) 2214 WP_258655717.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LOY24_RS07440 (LOY24_07435) exbB 1650112..1650747 (+) 636 WP_028614013.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LOY24_RS07445 (LOY24_07440) - 1650744..1651178 (+) 435 WP_016500906.1 biopolymer transporter ExbD -
  LOY24_RS07450 (LOY24_07445) lpxK 1651178..1652179 (+) 1002 WP_258655718.1 tetraacyldisaccharide 4'-kinase -
  LOY24_RS07455 (LOY24_07450) - 1652224..1652409 (+) 186 WP_003247142.1 Trm112 family protein -
  LOY24_RS07460 (LOY24_07455) kdsB 1652406..1653170 (+) 765 WP_258655719.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LOY24_RS07465 (LOY24_07460) - 1653170..1653634 (+) 465 WP_028614017.1 low molecular weight protein-tyrosine-phosphatase -
  LOY24_RS07470 (LOY24_07465) murB 1653631..1654650 (+) 1020 WP_258655720.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22861.14 Da        Isoelectric Point: 7.3616

>NTDB_id=627525 LOY24_RS07440 WP_028614013.1 1650112..1650747(+) (exbB) [Pseudomonas putida strain B21-029]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANASVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=627525 LOY24_RS07440 WP_028614013.1 1650112..1650747(+) (exbB) [Pseudomonas putida strain B21-029]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCTGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCGCCGCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCCCTGCGCGCCGATTCGCCATTGGGCGAAATCCTTGCCGCAGGCCTGGCCAAC
TCGCGTCATGGCCGCGAAATCATGAAAGAGTGCATCGAGGAAGCCGCCTCGCGCGTCATTCACGAACTGGAGCGTTACAT
CAGCACGCTCGGCACCATCGCCGCCATGGCCCCGCTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATCTTCA
GCGCCTTCATGGGCTCGCAGATGACTGCCAATGCGTCCGTGCTGGCCGGTGGTATCTCCAAGGCCCTGGTCACCACTGCG
GCCGGCCTGATGGTCGGTATCCCGGCGGTGTTTTTCCACCGCTTCCTGCTGCGCCGCATCGATGAGCTGGTGGTGGGCAT
GGAACAGGAGGCAATCAAGCTGGTGGAAGTGATCCAGGGCGACCGTGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.938

100

0.829