Detailed information NTG0627506

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: LOY23_RS27835
• Genome accession: NZ_CP087182
• Coordinates: 6085826..6087160 (+)
• Length: 444 a.a.
• NCBI ID: WP_041752595.1
• Uniprot ID: A0A9Q7R678
• Organism: Pseudomonas protegens strain B21-030
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 6080826..6092160

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LOY23_RS27815 (LOY23_27770)	pgeF	6082182..6082907 (-)	726	WP_077934794.1	peptidoglycan editing factor PgeF	-
LOY23_RS27820 (LOY23_27775)	rluD	6082904..6083866 (-)	963	WP_011063535.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
LOY23_RS27825 (LOY23_27780)	-	6084017..6085042 (+)	1026	WP_011063536.1	outer membrane protein assembly factor BamD	-
LOY23_RS27830 (LOY23_27785)	-	6085167..6085400 (+)	234	WP_015637081.1	PP0621 family protein	-
LOY23_RS27835 (LOY23_27790)	pilR	6085826..6087160 (+)	1335	WP_041752595.1	sigma-54 dependent transcriptional regulator	Regulator
LOY23_RS27840 (LOY23_27795)	thiO	6087157..6088257 (-)	1101	WP_174395141.1	glycine oxidase ThiO	-
LOY23_RS27845 (LOY23_27800)	-	6088311..6088712 (-)	402	WP_015637084.1	type IV pilin protein	-
LOY23_RS27850 (LOY23_27805)	-	6088728..6091790 (-)	3063	WP_174395142.1	pilus assembly protein	-

Sequence

Protein

• Length: 444 a.a.
• Molecular weight: 49275.50 Da
• Isoelectric Point: 8.6800

>NTDB_id=627506 LOY23_RS27835 WP_041752595.1 6085826..6087160(+) (pilR) [Pseudomonas protegens strain B21-030]
MNPRQSVLVVDDATETRALVEITLGRMRLHTQSARTLQEARGRLARERFDLCLTDLQLPDGSGLELLRHIRQSHPNLPVA
LLSNGACAQASAGALQAGACQLLHKPLDLKQLRAWVGASLKQATDCATDDPARQLLGDSAPMNALRRHIDKLAHSLAAVY
ISGESGSGKERVARLLHQLGPRARYPFVPVNCGAIPSELMESELFGHCKGSFSGAVSDQPGLFLAAHGGTLFLDEVADLP
LAMQVKLLRALQEKSVRPVGSQQEKTVDVRILCATHKDLKNEVETGRFRQDLYYRLNVIELRVPALRERRGDIPALAGHV
LQRLARDSGQPAVQLRPEALQALERYDFPGNVRELENLLERAQTLCEGRWIETDDLQLPRADSLEARSSAAATQLDLALH
LQQVERQLLLQALEETRWNRTAAARRLSLSFRSMRYRMKKLGLD

Nucleotide

• Length: 1335 bp

>NTDB_id=627506 LOY23_RS27835 WP_041752595.1 6085826..6087160(+) (pilR) [Pseudomonas protegens strain B21-030]
ATGAACCCACGGCAATCGGTGCTGGTGGTCGATGACGCCACGGAAACCCGCGCCCTTGTGGAGATCACTCTGGGCCGAAT
GCGCTTGCACACCCAAAGTGCGCGCACCCTGCAGGAAGCCCGTGGCCGCCTGGCCCGGGAGCGCTTTGACCTGTGCCTGA
CCGACCTGCAGCTACCGGACGGCAGCGGGCTGGAGCTGCTGCGGCACATCCGCCAGTCCCACCCCAACCTTCCTGTGGCG
CTGCTAAGCAACGGCGCCTGTGCACAGGCCAGCGCGGGCGCCCTGCAGGCCGGAGCCTGCCAGTTGCTGCACAAGCCTCT
GGACCTCAAGCAACTGCGCGCTTGGGTAGGTGCCAGCCTGAAGCAGGCCACGGACTGCGCAACGGATGACCCAGCCCGGC
AATTGCTGGGAGACTCGGCGCCCATGAATGCCCTGCGTCGCCACATCGACAAGCTGGCCCACAGCCTGGCGGCGGTCTAT
ATCAGCGGTGAATCCGGCAGTGGCAAGGAACGGGTCGCCCGCCTGCTCCACCAGCTTGGCCCCAGGGCCCGATACCCGTT
CGTCCCGGTCAACTGCGGGGCGATTCCTTCCGAATTGATGGAGAGTGAACTCTTCGGCCATTGCAAAGGCAGCTTCAGTG
GCGCCGTCAGCGATCAGCCCGGGTTATTTCTAGCCGCCCACGGCGGCACCCTGTTTCTTGATGAGGTCGCCGACCTGCCC
CTGGCCATGCAAGTAAAACTGCTGCGAGCCTTGCAGGAAAAATCCGTGCGCCCTGTAGGCAGCCAACAGGAAAAAACCGT
CGACGTGCGGATTCTCTGTGCCACCCACAAGGACCTGAAAAACGAGGTCGAGACCGGACGCTTTCGCCAGGACCTCTACT
ACCGCCTGAACGTCATCGAGTTGCGAGTCCCGGCGTTGCGTGAGCGCCGTGGCGACATCCCCGCACTGGCCGGGCACGTC
CTGCAGCGCCTGGCCAGGGACAGCGGCCAGCCTGCCGTCCAGCTACGTCCCGAAGCCCTGCAAGCCCTGGAGCGCTATGA
CTTTCCGGGCAACGTGCGAGAGCTGGAAAACCTGCTGGAACGGGCGCAGACCCTATGCGAAGGACGCTGGATAGAAACAG
ACGACCTGCAGTTGCCCAGAGCCGACAGCCTAGAAGCCCGATCATCGGCGGCGGCCACCCAGCTAGATCTGGCGCTGCAC
CTGCAACAGGTGGAGCGCCAGCTGCTGCTCCAGGCCCTGGAGGAAACCCGCTGGAACCGTACGGCGGCGGCCCGGCGGCT
GAGCCTGTCGTTTCGTTCGATGCGTTACCGCATGAAGAAGCTCGGGCTGGACTAG

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (136-301)

• Response regulator receiver domain (Response_reg) (7-114)

• Bacterial regulatory protein, Fis family (HTH_8) (401-441)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	63.205	99.775	0.631
pilR	Acinetobacter baumannii strain A118	45.534	100	0.471
luxO	Vibrio cholerae strain A1552	37.327	97.748	0.365