Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   LOY53_RS07275 Genome accession   NZ_CP087181
Coordinates   1613895..1616111 (+) Length   738 a.a.
NCBI ID   WP_252827108.1    Uniprot ID   -
Organism   Pseudomonas sp. B21-031     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1608895..1621111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY53_RS07255 (LOY53_07245) - 1610778..1611401 (+) 624 WP_099453294.1 glutathione S-transferase -
  LOY53_RS07260 (LOY53_07250) - 1611535..1612467 (+) 933 WP_252827106.1 ABC transporter ATP-binding protein -
  LOY53_RS07265 (LOY53_07255) - 1612464..1613243 (+) 780 WP_016500910.1 ABC transporter permease -
  LOY53_RS07270 (LOY53_07260) - 1613127..1613753 (-) 627 WP_252827107.1 DUF2062 domain-containing protein -
  LOY53_RS07275 (LOY53_07265) comA 1613895..1616111 (+) 2217 WP_252827108.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LOY53_RS07280 (LOY53_07270) exbB 1616268..1616903 (+) 636 WP_027596066.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LOY53_RS07285 (LOY53_07275) - 1616900..1617334 (+) 435 WP_027596067.1 biopolymer transporter ExbD -
  LOY53_RS07290 (LOY53_07280) lpxK 1617334..1618344 (+) 1011 WP_252827109.1 tetraacyldisaccharide 4'-kinase -
  LOY53_RS07295 (LOY53_07285) - 1618388..1618573 (+) 186 WP_003247142.1 Trm112 family protein -
  LOY53_RS07300 (LOY53_07290) kdsB 1618570..1619334 (+) 765 WP_099453299.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LOY53_RS07305 (LOY53_07295) - 1619334..1619798 (+) 465 WP_258703796.1 low molecular weight protein-tyrosine-phosphatase -
  LOY53_RS07310 (LOY53_07300) murB 1619795..1620814 (+) 1020 WP_258703797.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 79246.95 Da        Isoelectric Point: 9.7508

>NTDB_id=627478 LOY53_RS07275 WP_252827108.1 1613895..1616111(+) (comA) [Pseudomonas sp. B21-031]
MRTGMFALALGLLCLGFLPVLPSVGWLLLLLVGAVACLFTRFWPVGCFLLGLCWACGSAQRALDDRLAPELDGRTLWLEG
KVVGLPSRTAQGVRFELEQPYSRRAELPRRLQLSWFDGPPVRAGEQWRLAVALQRPAGLLNPHGPDREAQLLARRVGATG
TVKAGQVLSAVAGSWRDELRQRLLAVEANGRQAVLVALVLGDGAGLAREDWQTLQATGTVHLLVISGQHIGLVAGLLYGL
VAGLARWGLWPARLPWLPSACGLAMAGALAYGWLAGGGVPVQRACLMLAVVLLWRLRFRHLGATLPLLLALVAVLLFEPL
AALLPGFWLSFAAVATLIYCFSARLGGWRPWQAWTRAQWVIAIGLLPVLLATGLPVSLSAPLANLLAVPWVSLAVLPLAL
LGTLLLPVAGGGEALLWLAGGLLEVLFRVLALAASWRPAWVPPALPLWAWSVVCLGALLVLLPRGVPLRGLGGLMLLALW
VPRASVPLGQVEVWQLDVGQGLAVLLRTRNHSLLYDAGPAKGEYDAGARVVLPTLRKLGVSHLDAMLISHAHADHAGGAP
AIAQGMSVTRVLGGEELEGLGLQPCVTGEQWEWDGVRFSLWHWAEGQSSNDRSCVLLVEAQGERLLLAGDLEAAAERAWL
ASTDTPRIDWLQAPHHGSRSSSIEAFIRATAPRGVLISRGRNNGFGHPHAQVLERYRRHGLAIHDTALEGALRLVLGRQG
DVEGVRGQRRFWREAGSG

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=627478 LOY53_RS07275 WP_252827108.1 1613895..1616111(+) (comA) [Pseudomonas sp. B21-031]
ATGCGCACAGGGATGTTTGCGCTCGCGCTCGGGCTGCTCTGCCTGGGCTTTCTCCCCGTATTGCCATCGGTCGGATGGCT
ACTTCTGCTGTTAGTCGGCGCTGTCGCCTGCCTGTTCACGCGGTTTTGGCCAGTGGGCTGTTTTCTGTTGGGCCTGTGCT
GGGCGTGCGGGTCGGCCCAGCGAGCGCTAGATGACCGACTCGCGCCTGAACTGGATGGCCGCACGTTATGGCTGGAGGGC
AAGGTTGTCGGCCTGCCGAGCCGCACCGCGCAAGGCGTGCGCTTCGAGCTGGAGCAACCCTACTCACGGCGTGCCGAACT
GCCGCGGCGCCTGCAACTGAGCTGGTTCGACGGGCCGCCGGTGCGTGCAGGCGAGCAGTGGCGCTTGGCAGTGGCCCTGC
AGCGGCCTGCCGGGCTGCTCAACCCCCATGGGCCTGATCGAGAGGCACAATTGCTGGCACGGCGGGTGGGGGCTACTGGC
ACGGTCAAGGCCGGGCAGGTGTTGAGCGCTGTAGCGGGCAGCTGGCGAGACGAACTGCGGCAACGGTTGTTGGCGGTCGA
GGCCAATGGCCGGCAAGCGGTGTTGGTGGCCTTGGTGTTGGGCGACGGTGCGGGCCTGGCCCGCGAGGACTGGCAGACGC
TGCAGGCCACGGGCACGGTGCACCTGCTGGTGATTTCCGGGCAGCACATCGGCCTGGTGGCGGGTTTGCTCTATGGCCTG
GTTGCCGGGTTGGCACGTTGGGGCCTGTGGCCCGCGCGGCTGCCCTGGCTGCCCTCGGCTTGCGGCCTGGCGATGGCAGG
CGCGCTGGCCTACGGCTGGCTTGCCGGTGGCGGCGTGCCGGTGCAGCGGGCCTGCCTGATGCTGGCAGTGGTGTTGCTTT
GGCGTCTGCGCTTTCGTCACCTTGGCGCGACGCTGCCGTTGCTGCTGGCGCTGGTCGCCGTGCTGTTGTTCGAACCCTTG
GCGGCGCTGTTGCCGGGGTTCTGGCTGTCGTTTGCCGCTGTGGCGACCTTGATCTACTGCTTCAGTGCCCGCCTGGGTGG
CTGGCGGCCCTGGCAGGCCTGGACGCGTGCGCAATGGGTGATCGCCATCGGCTTGCTGCCGGTGCTGCTGGCCACTGGCT
TGCCGGTGAGCCTGAGTGCGCCCCTGGCCAACTTGCTGGCGGTGCCGTGGGTCAGCCTTGCGGTGTTGCCGTTGGCTTTG
CTGGGGACGCTGCTGTTGCCCGTGGCGGGTGGAGGAGAGGCTTTGCTGTGGCTGGCCGGGGGCTTGCTGGAGGTGCTGTT
CAGGGTCTTGGCCCTGGCCGCGAGCTGGCGCCCAGCGTGGGTGCCGCCGGCCTTGCCGCTGTGGGCCTGGTCAGTGGTGT
GCCTGGGCGCGCTGCTGGTGCTGCTACCCCGTGGCGTGCCCTTGCGAGGGTTGGGCGGGCTCATGCTGCTGGCGTTATGG
GTGCCTAGGGCGTCGGTGCCCTTGGGGCAGGTGGAGGTCTGGCAGTTGGACGTCGGCCAGGGGCTGGCGGTGCTACTGCG
TACCCGCAATCACAGCCTGCTCTACGATGCCGGGCCAGCAAAAGGGGAGTACGACGCGGGGGCGCGTGTGGTGCTGCCGA
CCCTGCGCAAGCTGGGCGTAAGCCACTTGGATGCGATGCTGATCAGCCACGCCCATGCCGACCATGCTGGGGGCGCGCCG
GCCATTGCGCAGGGCATGTCTGTCACGCGGGTGCTCGGTGGCGAGGAGTTAGAGGGCCTTGGGCTGCAGCCGTGTGTCAC
CGGTGAGCAATGGGAGTGGGATGGCGTGCGTTTTTCCCTCTGGCATTGGGCTGAAGGGCAGAGCAGTAACGACCGCTCAT
GCGTGCTGCTGGTCGAGGCGCAAGGGGAGCGCTTGCTGTTGGCCGGCGACCTGGAGGCCGCAGCTGAACGGGCCTGGCTG
GCGTCTACTGATACACCCCGCATCGACTGGCTGCAGGCCCCGCACCATGGCAGTCGCAGCTCGTCCATCGAGGCATTCAT
CCGCGCCACGGCGCCACGTGGAGTGCTGATATCGCGGGGGCGCAACAATGGTTTTGGTCATCCGCATGCCCAGGTGCTCG
AGCGCTATCGGCGGCATGGGCTGGCGATTCATGATACGGCGCTGGAGGGTGCGTTGCGCTTGGTGCTGGGGCGTCAGGGT
GACGTTGAGGGTGTGCGGGGGCAGCGGCGCTTCTGGCGTGAAGCGGGCAGTGGCTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(21-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-675)

Competence protein (Competence)

(198-463)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.805

97.425

0.583
  comA Ralstonia pseudosolanacearum GMI1000

36.178

100

0.385