Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LOY53_RS07280 Genome accession   NZ_CP087181
Coordinates   1616268..1616903 (+) Length   211 a.a.
NCBI ID   WP_027596066.1    Uniprot ID   A0A0Q4NFV9
Organism   Pseudomonas sp. B21-031     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1611268..1621903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY53_RS07260 (LOY53_07250) - 1611535..1612467 (+) 933 WP_252827106.1 ABC transporter ATP-binding protein -
  LOY53_RS07265 (LOY53_07255) - 1612464..1613243 (+) 780 WP_016500910.1 ABC transporter permease -
  LOY53_RS07270 (LOY53_07260) - 1613127..1613753 (-) 627 WP_252827107.1 DUF2062 domain-containing protein -
  LOY53_RS07275 (LOY53_07265) comA 1613895..1616111 (+) 2217 WP_252827108.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LOY53_RS07280 (LOY53_07270) exbB 1616268..1616903 (+) 636 WP_027596066.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LOY53_RS07285 (LOY53_07275) - 1616900..1617334 (+) 435 WP_027596067.1 biopolymer transporter ExbD -
  LOY53_RS07290 (LOY53_07280) lpxK 1617334..1618344 (+) 1011 WP_252827109.1 tetraacyldisaccharide 4'-kinase -
  LOY53_RS07295 (LOY53_07285) - 1618388..1618573 (+) 186 WP_003247142.1 Trm112 family protein -
  LOY53_RS07300 (LOY53_07290) kdsB 1618570..1619334 (+) 765 WP_099453299.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LOY53_RS07305 (LOY53_07295) - 1619334..1619798 (+) 465 WP_258703796.1 low molecular weight protein-tyrosine-phosphatase -
  LOY53_RS07310 (LOY53_07300) murB 1619795..1620814 (+) 1020 WP_258703797.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22887.22 Da        Isoelectric Point: 7.3616

>NTDB_id=627479 LOY53_RS07280 WP_027596066.1 1616268..1616903(+) (exbB) [Pseudomonas sp. B21-031]
MWELVKSGGWMMLPIILSSIVAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMIGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=627479 LOY53_RS07280 WP_027596066.1 1616268..1616903(+) (exbB) [Pseudomonas sp. B21-031]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGTTCCATCGTTGCCATGGCTATCGTTGT
CGAGCGCCTGTGGACCCTGCGCGCCAGTCGCGTGACCCCGCCACACCTGTTGGGCCAGGTCTGGATGTGGATCAAGGACA
AGCAACTCACCAGTGACAAGCTCAAGGCCCTGCGCGCCGATTCGCCGCTGGGCGAAATCCTTGCCGCAGGCCTTGCCAAC
TCGCGCCATGGCCGCGAAATCATGAAAGAGTGCATCGAGGAGGCCGCATCGCGCGTCATCCACGAGCTGGAGCGCTACAT
CAGCACCCTTGGCACCATCGCTGCGATGGCCCCGTTGTTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATTTTCA
GCGCCTTCATGGGCTCGCAGATGACCGCCAACGCCGCCGTATTGGCCGGGGGTATTTCCAAGGCCCTGGTCACCACTGCA
GCGGGCTTGATGATCGGTATCCCGGCGGTGTTCTTCCACCGTTTCCTGCTGCGCCGCATCGATGAGCTGGTGGTCGGCAT
GGAACAAGAGGCGATCAAGCTGGTGGAAGTGATCCAGGGCGACCGTGAAGTCGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q4NFV9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.991

100

0.82