Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   LOY54_RS19580 Genome accession   NZ_CP087180
Coordinates   4262216..4264438 (-) Length   740 a.a.
NCBI ID   WP_258607640.1    Uniprot ID   -
Organism   Pseudomonas sp. B21-032     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4257216..4269438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY54_RS19545 (LOY54_19525) murB 4257607..4258626 (-) 1020 WP_258607638.1 UDP-N-acetylmuramate dehydrogenase -
  LOY54_RS19550 (LOY54_19530) - 4258623..4259087 (-) 465 WP_045195182.1 low molecular weight protein-tyrosine-phosphatase -
  LOY54_RS19555 (LOY54_19535) kdsB 4259087..4259851 (-) 765 WP_045195184.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LOY54_RS19560 (LOY54_19540) - 4259848..4260033 (-) 186 WP_038994143.1 Trm112 family protein -
  LOY54_RS19565 (LOY54_19545) lpxK 4260072..4261082 (-) 1011 WP_258607639.1 tetraacyldisaccharide 4'-kinase -
  LOY54_RS19570 (LOY54_19550) - 4261082..4261513 (-) 432 WP_045195189.1 biopolymer transporter ExbD -
  LOY54_RS19575 (LOY54_19555) exbB 4261510..4262145 (-) 636 WP_176794233.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LOY54_RS19580 (LOY54_19560) comA 4262216..4264438 (-) 2223 WP_258607640.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LOY54_RS19585 (LOY54_19565) - 4264582..4265124 (+) 543 WP_045195193.1 DUF2062 domain-containing protein -
  LOY54_RS19590 (LOY54_19570) - 4265092..4265871 (-) 780 WP_045195195.1 ABC transporter permease -
  LOY54_RS19595 (LOY54_19575) - 4265868..4266800 (-) 933 WP_045195197.1 ABC transporter ATP-binding protein -
  LOY54_RS19600 (LOY54_19580) - 4266955..4267578 (-) 624 WP_123567236.1 glutathione S-transferase family protein -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 80827.84 Da        Isoelectric Point: 9.6934

>NTDB_id=627461 LOY54_RS19580 WP_258607640.1 4262216..4264438(-) (comA) [Pseudomonas sp. B21-032]
MRTGMLALALGLLSLGFLPALPPVWILVLLTVAGLCCLPTRLWPAGLFLLGLSWACVSAQWALDERLAAQFDGRTLWIEG
RVAGLPEQGARSVRFELSDAESRRGQLPRRMQLSWFGGPAVNSGEYWRLAVSLKRPAGLLNPHGPDQEASLLARRIGATG
SVKAGERLLPATAAWRDDLRQRLLSVDAQGREAALVALILGDGGALARQDWQALQATGTVHLLVISGQHIGLLAGLVYAL
IAGLARLGWWPQRLPWLPWACALAFAAALAYGLLAGFQVPVQRACMMLAMVLLWRLRFRHLGVGLPLLLALDAVLLWEPL
ASLQPGFWLSFMAVAILIFTFSGRLGAWNPWLAWSRAQWLIAIGLLPVLLAQGLPVSLTAPLINLLAVPWISLAVLPIAL
LGTVLLPVPLLGEGLLWLAGGLLDGLFRLLAHVAVWQPAWMPEPLPFWAWLLVCLGALLVLLPRGIPMRVLGWPLLLLAV
FAPRERVPQGQVEVWQLDVGQGLAFVLRTRHHAMLYDAGPAMGDFDLGERVVLPSLRKLGVSKLDLMLLSHADADHAGGA
RAVQRGLPVLRVQAGEAAALPEVLQAQPCSSGERWQWDGVSFSLWQWQDAGDSNQDSCVLLVEANGEKLLLTGDLDARGE
RAWARGWQATTVDWLQSPHHGSRSSSSEALLKATTPRGVLISRGRYNAFGHPHPEVMARYRTHGIQAYDNVDHGALRLRL
GVFGEPEGLRAQRRFWREPR

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=627461 LOY54_RS19580 WP_258607640.1 4262216..4264438(-) (comA) [Pseudomonas sp. B21-032]
ATGCGCACAGGGATGTTGGCGCTTGCACTCGGGCTGCTCAGCCTCGGGTTCCTGCCGGCTTTGCCGCCCGTCTGGATACT
TGTCCTGCTGACAGTTGCCGGGCTTTGCTGCCTGCCTACGCGGCTGTGGCCCGCCGGGCTGTTTCTGCTGGGCTTGAGCT
GGGCGTGCGTCTCGGCGCAATGGGCGTTGGATGAGCGTCTGGCGGCGCAGTTCGATGGCCGTACCCTGTGGATAGAGGGC
CGGGTTGCTGGCTTGCCGGAGCAGGGTGCGCGCTCGGTGAGGTTCGAGTTGAGCGATGCCGAGTCGCGCCGGGGGCAATT
GCCAAGGCGCATGCAGCTCAGCTGGTTCGGCGGCCCGGCGGTCAACAGCGGTGAGTACTGGCGTTTGGCAGTCAGCCTCA
AGCGCCCCGCAGGTTTGCTCAATCCTCACGGCCCGGACCAGGAGGCCAGTTTGTTGGCCCGGCGCATCGGCGCCACCGGC
AGCGTCAAAGCCGGCGAGCGGCTGCTGCCGGCAACGGCGGCCTGGCGGGATGATCTGCGCCAGCGCTTGCTCAGCGTTGA
TGCCCAGGGCCGGGAGGCGGCGCTGGTGGCCTTGATACTCGGCGATGGCGGCGCTTTGGCGCGCCAGGACTGGCAAGCGC
TGCAGGCCACCGGCACGGTGCACTTGCTGGTGATTTCCGGCCAGCATATTGGCCTGTTGGCCGGGCTGGTATACGCCTTG
ATTGCCGGGCTGGCGCGCCTGGGCTGGTGGCCGCAACGGCTACCCTGGCTGCCTTGGGCCTGTGCGCTGGCCTTTGCCGC
AGCACTGGCCTATGGCTTGCTGGCCGGGTTTCAGGTGCCGGTGCAGCGCGCCTGCATGATGCTGGCCATGGTGCTGCTCT
GGCGCCTGCGCTTTCGTCACCTGGGTGTCGGGCTGCCGTTGTTGCTGGCGCTCGATGCAGTGCTGCTGTGGGAACCATTG
GCCAGCTTGCAGCCGGGCTTCTGGCTGTCGTTCATGGCCGTGGCCATTCTGATCTTCACCTTCAGCGGCCGCCTTGGCGC
CTGGAACCCCTGGCTGGCCTGGAGTCGCGCCCAGTGGTTGATCGCCATCGGCTTGCTGCCGGTGCTGCTGGCGCAAGGTT
TGCCGGTGAGCCTGACGGCGCCGCTGATCAACCTGCTGGCAGTGCCGTGGATCAGCCTTGCGGTATTGCCAATCGCGTTG
CTAGGCACTGTGTTGCTGCCGGTGCCGCTTCTGGGGGAAGGCTTGCTGTGGCTTGCCGGCGGCCTGCTCGACGGTTTGTT
TCGCTTGCTGGCGCATGTGGCGGTTTGGCAACCGGCCTGGATGCCAGAACCATTGCCGTTCTGGGCCTGGTTGCTGGTAT
GCCTGGGGGCATTGCTGGTGTTGTTGCCGCGTGGCATACCGATGCGGGTGCTGGGCTGGCCATTGTTGCTGTTGGCGGTG
TTTGCGCCCCGAGAGCGCGTGCCGCAGGGGCAGGTAGAGGTCTGGCAGCTGGATGTCGGCCAGGGGCTGGCCTTTGTGCT
GCGCACCCGGCACCACGCCATGTTGTATGACGCCGGCCCGGCCATGGGCGATTTCGATCTGGGCGAGCGGGTAGTGCTTC
CCAGCTTGCGCAAGCTGGGGGTAAGCAAGCTCGACCTGATGTTGCTCAGCCACGCCGACGCCGATCACGCCGGGGGCGCC
CGCGCCGTGCAGCGCGGGTTGCCGGTGCTGCGGGTGCAGGCTGGTGAGGCTGCGGCCTTGCCTGAAGTGCTGCAAGCGCA
GCCGTGCAGCAGCGGCGAACGCTGGCAGTGGGACGGGGTGAGTTTTTCACTGTGGCAGTGGCAGGATGCTGGCGACAGCA
ACCAGGATTCCTGTGTGCTGCTGGTCGAGGCAAATGGCGAAAAACTGCTGCTCACCGGCGATCTCGATGCCCGCGGCGAA
CGGGCCTGGGCGCGGGGCTGGCAGGCGACCACGGTCGACTGGCTGCAATCGCCCCATCACGGCAGTCGCAGCTCCTCCAG
CGAGGCCTTGTTAAAGGCTACTACCCCGCGCGGCGTGCTGATTTCGCGCGGGCGCTACAACGCTTTCGGGCATCCGCACC
CGGAAGTCATGGCGCGCTATCGGACGCACGGTATTCAGGCCTATGACAATGTCGACCACGGTGCCTTGCGCCTGCGCCTG
GGTGTGTTCGGCGAGCCTGAGGGGTTGCGTGCCCAGCGGCGTTTCTGGCGTGAACCAAGATGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-680)

Domain of unknown function (DUF4131) (DUF4131)

(23-167)

Competence protein (Competence)

(198-462)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.66

98.243

0.596
  comA Ralstonia pseudosolanacearum GMI1000

33.294

100

0.38